diff --git a/config/Locus_to_exclude_Mtb.bed b/config/Locus_to_exclude_Mtb.bed index a66d26a..1f9a706 100644 --- a/config/Locus_to_exclude_Mtb.bed +++ b/config/Locus_to_exclude_Mtb.bed @@ -1,506 +1,506 @@ -Chrom ChromStart ChromEnd locus tag Comment -NC_000962 23182 23269 IG18_Rv0018c-Rv0019c -NC_000962 33582 33794 Rv0031 remnant of A transposase -NC_000962 80194 80623 IG71_Rv0071-Rv0072 -NC_000962 103710 104663 Rv0094c 50bp_duplicated -NC_000962 104663 104805 IG_Rv0094c-Rv0095c -NC_000962 104805 105215 Rv0095c 50bp_duplicated -NC_000962 105215 105324 IG_Rv0095c-Rv0096 -NC_000962 105324 106715 Rv0096 PPE family protein -NC_000962 131382 132872 Rv0109 PE-PGRS family protein -NC_000962 149533 150996 Rv0124 PE-PGRS family protein -NC_000962 154130 154231 IG127_Rv0126-Rv0127 -NC_000962 177543 179309 Rv0151c PE family protein -NC_000962 179309 179319 IG_Rv0151c-Rv0152c -NC_000962 179319 180896 Rv0152c PE family protein -NC_000962 187433 188839 Rv0159c PE family protein -NC_000962 188839 188931 IG_Rv0159c-Rv0160c -NC_000962 188931 190439 Rv0160c PE family protein -NC_000962 307877 309547 Rv0256c PPE family protein -NC_000962 309547 309699 IG_Rv0256c-Rv0257 -NC_000962 309699 310073 Rv0257 50bp_duplicated -NC_000962 332708 333136 Rv0277c 50bp_duplicated -NC_000962 333136 333437 IG_Rv0277c-Rv0278c -NC_000962 333437 336310 Rv0278c PE-PGRS family protein -NC_000962 336310 336560 IG_Rv0278c-Rv0279c -NC_000962 336560 339073 Rv0279c PE-PGRS family protein -NC_000962 339073 339364 IG_Rv0279c-Rv0280 -NC_000962 339364 340974 Rv0280 PPE family protein -NC_000962 349624 349932 Rv0285 PE family protein -NC_000962 349935 351476 Rv0286 PPE family protein -NC_000962 361334 363109 Rv0297 PE-PGRS family protein -NC_000962 366150 372764 Rv0304c PPE family protein -NC_000962 372764 372820 IG_Rv0304c-Rv0305c -NC_000962 372820 375711 Rv0305c PPE family protein -NC_000962 399535 400050 Rv0335c PE family protein -NC_000962 400050 400192 IG_Rv0335c-Rv0336 -NC_000962 400192 401703 Rv0336 50bp_duplicated -NC_000962 423639 424019 Rv0353 50bp_duplicated -NC_000962 424019 424269 IG_Rv0353-Rv0354c -NC_000962 424269 424694 Rv0354c PPE family protein -NC_000962 424694 424777 IG_Rv0354c-Rv0355c -NC_000962 424777 434679 Rv0355c PPE family protein -NC_000962 466672 467406 Rv0387c PPE family protein -NC_000962 467406 467459 IG_Rv0387c-Rv0388c -NC_000962 467459 468001 Rv0388c PPE family protein -NC_000962 472781 474106 Rv0393 50bp_duplicated -NC_000962 475816 476184 Rv0397 50bp_duplicated -NC_000962 530751 532214 Rv0442c PPE family protein -NC_000962 543174 544730 Rv0453 PPE family protein -NC_000962 576787 577338 Rv0487 50bp_duplicated -NC_000962 579349 580581 Rv0490 50bp_duplicated -NC_000962 606551 608062 Rv0515 50bp_duplicated -NC_000962 616832 616845 IG533_Rv0525-Rv0526 -NC_000962 622793 624577 Rv0532 PE-PGRS family protein -NC_000962 630040 631686 Rv0538 50bp_duplicated -NC_000962 642812 642888 IG559_Rv0551c-Rv0552 -NC_000962 671996 675916 Rv0578c PE-PGRS family protein -NC_000962 701406 702014 Rv0605 repeat region -NC_000962 706930 706947 IG622_Rv0612-Rv0613c -NC_000962 831776 832303 Rv0740 50bp_duplicated -NC_000962 832303 832534 IG_Rv0740-Rv0741 -NC_000962 832534 832848 Rv0741 transposase -NC_000962 832848 832981 IG_Rv0741-Rv0742 -NC_000962 832981 833508 Rv0742 PE-PGRS family protein -NC_000962 835701 838052 Rv0746 PE-PGRS family protein -NC_000962 838052 838451 IG_Rv0746-Rv0747 -NC_000962 838451 840856 Rv0747 PE-PGRS family protein -NC_000962 842033 842278 Rv0750 50bp_duplicated -NC_000962 846159 847913 Rv0754 PE-PGRS family protein -NC_000962 847913 850527 IG_Rv0754-Rv0755A -NC_000962 848103 850040 Rv0755c PPE family protein -NC_000962 850342 850527 Rv0755A transposase -NC_000962 863159 863255 IG784_Rv0769-Rv0770 -NC_000962 889072 889398 Rv0795 transposase IS6110 -NC_000962 889347 890333 Rv0796 transposase IS6110 -NC_000962 889347 889398 IG_Rv0795-Rv0796 -NC_000962 890333 890388 IG_Rv0796-Rv0797 -NC_000962 890388 891482 Rv0797 50bp_duplicated -NC_000962 908181 908483 Rv0814c 50bp_duplicated -NC_000962 916477 917646 Rv0823c 50bp_duplicated -NC_000962 921575 921865 Rv0829 50bp_duplicated -NC_000962 924951 925364 Rv0832 PE-PGRS family protein -NC_000962 925361 927610 Rv0833 PE-PGRS family protein -NC_000962 927610 927837 IG_Rv0833-Rv0834c -NC_000962 927837 930485 Rv0834c PE-PGRS family protein -NC_000962 947312 947644 Rv0850 transposase -NC_000962 960152 960341 IG877_Rv0861c-Rv0862c -NC_000962 964312 965535 Rv0867c 50bp_duplicated -NC_000962 968424 970244 Rv0872c PE-PGRS family protein -NC_000962 976872 978203 Rv0878c PPE family protein -NC_000962 1020058 1021329 Rv0915c PPE family protein -NC_000962 1021329 1021344 IG_Rv0915c-Rv0916c -NC_000962 1021344 1021643 Rv0916c PE family protein -NC_000962 1025497 1026816 Rv0920c transposase -NC_000962 1026816 1027104 IG_Rv0920c-Rv0921 -NC_000962 1027104 1027685 Rv0921 resolvase -NC_000962 1027685 1029337 Rv0922 transposase -NC_000962 1090373 1093144 Rv0977 PE-PGRS family protein -NC_000962 1093144 1093361 IG_Rv0977-Rv0978c -NC_000962 1093361 1094356 Rv0978c PE-PGRS family protein -NC_000962 1095078 1096451 Rv0980c PE-PGRS family protein -NC_000962 1158918 1159307 Rv1034c transposase -NC_000962 1159307 1159375 IG_Rv1034c-Rv1035c -NC_000962 1159375 1160061 Rv1035c transposase -NC_000962 1160061 1160095 IG_Rv1035c-Rv1036c -NC_000962 1160095 1160433 Rv1036c truncated IS1560 transposase -NC_000962 1160433 1160544 IG_Rv1036c-Rv1037c -NC_000962 1160544 1160828 Rv1037c 50bp_duplicated -NC_000962 1160828 1160855 IG_Rv1037c-Rv1038c -NC_000962 1160855 1161151 Rv1038c 50bp_duplicated -NC_000962 1161151 1161297 IG_Rv1038c-Rv1039c -NC_000962 1161297 1162472 Rv1039c PPE family protein -NC_000962 1162472 1162549 IG_Rv1039c-Rv1040c -NC_000962 1162549 1163376 Rv1040c PE family protein -NC_000962 1163376 1164572 IG_Rv1040c-Rv1041c -NC_000962 1164572 1165435 Rv1041c IS like-2 transposase -NC_000962 1165092 1165499 Rv1042c IS like-2 transposase -NC_000962 1169423 1170670 Rv1047 transposase -NC_000962 1188421 1190424 Rv1067c PE-PGRS family protein -NC_000962 1190424 1190757 IG_Rv1067c-Rv1068c -NC_000962 1190757 1192148 Rv1068c PE-PGRS family protein -NC_000962 1211560 1213863 Rv1087 PE-PGRS family protein -NC_000962 1213863 1214513 IG_Rv1087-Rv1088 -NC_000962 1214513 1214947 Rv1088 PE family protein -NC_000962 1214769 1215131 Rv1089 PE family protein -NC_000962 1216469 1219030 Rv1091 PE-PGRS family protein -NC_000962 1251617 1252972 Rv1128c repeat_region -NC_000962 1262272 1264128 Rv1135c PPE family protein -NC_000962 1276300 1277748 Rv1148c 50bp_duplicated -NC_000962 1277748 1277893 IG_Rv1148c-Rv1149 -NC_000962 1277893 1278300 Rv1149 transposase -NC_000962 1278269 1278820 Rv1150 Possible fragment of transposase -NC_000962 1298764 1299804 Rv1168c PPE family protein -NC_000962 1299804 1299822 IG_Rv1168c-Rv1169c -NC_000962 1299822 1300124 Rv1169c PE family protein -NC_000962 1301755 1302681 Rv1172c PE family protein -NC_000962 1306002 1306201 IG1195_Rv1174c-Rv1175c -NC_000962 1339003 1339302 Rv1195 PE family protein -NC_000962 1339302 1339349 IG_Rv1195-Rv1196 -NC_000962 1339349 1340524 Rv1196 PPE family protein -NC_000962 1340524 1340659 IG_Rv1196-Rv1197 -NC_000962 1340659 1340955 Rv1197 50bp_duplicated -NC_000962 1340955 1341006 IG_Rv1197-Rv1198 -NC_000962 1341006 1341290 Rv1198 50bp_duplicated -NC_000962 1341290 1341358 IG_Rv1198-Rv1199c -NC_000962 1341358 1342605 Rv1199c transposase -NC_000962 1357293 1357625 Rv1214c PE family protein -NC_000962 1384989 1386677 Rv1243c PE-PGRS family protein -NC_000962 1441348 1442718 Rv1288 50bp_duplicated -NC_000962 1450697 1451779 Rv1295 50bp_duplicated -NC_000962 1468171 1469505 Rv1313c transposase -NC_000962 1479199 1480824 Rv1318c 50bp_duplicated -NC_000962 1480824 1480894 IG_Rv1318c-Rv1319c -NC_000962 1480894 1482501 Rv1319c 50bp_duplicated -NC_000962 1488154 1489965 Rv1325c PE-PGRS family protein -NC_000962 1532443 1533633 Rv1361c PPE family protein -NC_000962 1541994 1542980 Rv1369c transposase -NC_000962 1542929 1543255 Rv1370c transposase -NC_000962 1561464 1561772 Rv1386 PE family protein -NC_000962 1561769 1563388 Rv1387 PPE family protein -NC_000962 1572127 1573857 Rv1396c PE-PGRS family protein -NC_000962 1606386 1607972 Rv1430 PE family protein -NC_000962 1618209 1619684 Rv1441c PE-PGRS family protein -NC_000962 1630638 1634627 Rv1450c PE-PGRS family protein -NC_000962 1636004 1638229 Rv1452c PE-PGRS family protein -NC_000962 1643319 1644260 Rv1458c 50bp_duplicated -NC_000962 1655609 1656721 Rv1468c PE-PGRS family protein -NC_000962 1678942 1679172 Rv1489A 50bp_duplicated -NC_000962 1684005 1686257 Rv1493 50bp_duplicated -NC_000962 1751297 1753333 Rv1548c PPE family protein -NC_000962 1761744 1762937 Rv1557 repeat_region -NC_000962 1762937 1762947 IG_Rv1557-Rv1558 -NC_000962 1762947 1763393 Rv1558 repeat_region -NC_000962 1779194 1779298 Rv1572c repeat_region -NC_000962 1779298 1779314 IG_Rv1572c-Rv1573 -NC_000962 1779314 1779724 Rv1573 phiRV1 phage protein -NC_000962 1779724 1779930 IG_Rv1573-Rv1574 -NC_000962 1779930 1780241 Rv1574 repeat_region -NC_000962 1779930 1780241 Rv1574 phiRV1 phage related protein -NC_000962 1780199 1780699 Rv1575 repeat_region -NC_000962 1780199 1780699 Rv1575 phiRV1 phage protein -NC_000962 1780643 1782064 Rv1576c phiRV1 phage protein -NC_000962 1782064 1782072 IG_Rv1576c-Rv1577c -NC_000962 1782072 1782584 Rv1577c phiRv1 phage protein -NC_000962 1782584 1782758 IG_Rv1577c-Rv1578c -NC_000962 1782758 1783228 Rv1578c phiRv1 phage protein -NC_000962 1783228 1783309 IG_Rv1578c-Rv1579c -NC_000962 1783309 1783623 Rv1579c phiRv1 phage protein -NC_000962 1783620 1783892 Rv1580c phiRv1 phage protein -NC_000962 1783892 1783906 IG_Rv1580c-Rv1581c -NC_000962 1783906 1784301 Rv1581c phiRv1 phage protein -NC_000962 1784301 1784497 IG_Rv1581c-Rv1582c -NC_000962 1784497 1785912 Rv1582c phiRv1 phage protein -NC_000962 1785912 1786310 Rv1583c phiRv1 phage protein -NC_000962 1786307 1786528 Rv1584c phiRv1 phage protein -NC_000962 1786528 1786584 IG_Rv1584c-Rv1585c -NC_000962 1786584 1787099 Rv1585c phiRv1 phage protein -NC_000962 1787096 1788505 Rv1586c phiRv1 integrase -NC_000962 1788162 1789163 Rv1587c REP13E12 repeat-containing protein -NC_000962 1789163 1789168 IG_Rv1587c-Rv1588c -NC_000962 1789168 1789836 Rv1588c REP13E12 repeat-containing protein -NC_000962 1855764 1856696 Rv1646 PE family protein -NC_000962 1862347 1865382 Rv1651c PE-PGRS family protein -NC_000962 1907321 1907593 IG1711_Rv1682-Rv1683 -NC_000962 1927211 1928575 Rv1702c repeat_region -NC_000962 1931497 1932654 Rv1705c PPE family protein -NC_000962 1932654 1932694 IG_Rv1705c-Rv1706c -NC_000962 1932694 1933878 Rv1706c PPE family protein -NC_000962 1981614 1984775 Rv1753c PPE family protein -NC_000962 1987745 1988731 Rv1756c putative transposase -NC_000962 1988680 1989006 Rv1757c putative transposase -NC_000962 1989006 1989042 IG_Rv1757c-Rv1758 -NC_000962 1989042 1989566 Rv1758 putative transposase -NC_000962 1989566 1989833 IG_Rv1758-Rv1759c -NC_000962 1989833 1992577 Rv1759c PE-PGRS family protein -NC_000962 1996152 1996478 Rv1763 putative transposase -NC_000962 1996427 1997413 Rv1764 putative transposase -NC_000962 1997413 1997418 IG_Rv1764-Rv1765c -NC_000962 1997418 1998515 Rv1765c 50bp_duplicated -NC_000962 1998515 1999142 IG_Rv1765c-Rv1765A -NC_000962 1999142 1999357 Rv1765A transposase -NC_000962 2000614 2002470 Rv1768 PE-PGRS family protein -NC_000962 2025301 2026398 Rv1787 PPE family protein -NC_000962 2026398 2026477 IG_Rv1787-Rv1788 -NC_000962 2026477 2026776 Rv1788 PE family protein -NC_000962 2026776 2026790 IG_Rv1788-Rv1789 -NC_000962 2026790 2027971 Rv1789 PPE family protein -NC_000962 2027971 2028425 IG_Rv1789-Rv1790 -NC_000962 2028425 2029477 Rv1790 PPE family protein -NC_000962 2029477 2029904 IG_Rv1790-Rv1791 -NC_000962 2029904 2030203 Rv1791 PE family protein -NC_000962 2030694 2030978 Rv1793 50bp_duplicated -NC_000962 2039453 2041420 Rv1800 PPE family protein -NC_000962 2041420 2042001 IG_Rv1800-Rv1801 -NC_000962 2042001 2043272 Rv1801 PPE family protein -NC_000962 2043272 2043384 IG_Rv1801-Rv1802 -NC_000962 2043384 2044775 Rv1802 PPE family protein -NC_000962 2044775 2044923 IG_Rv1802-Rv1803c -NC_000962 2044923 2046842 Rv1803c PE-PGRS family protein -NC_000962 2048072 2048371 Rv1806 PE family protein -NC_000962 2048371 2048398 IG_Rv1806-Rv1807 -NC_000962 2048398 2049597 Rv1807 PPE family protein -NC_000962 2049597 2049921 IG_Rv1807-Rv1808 -NC_000962 2049921 2051150 Rv1808 PPE family protein -NC_000962 2051150 2051282 IG_Rv1808-Rv1809 -NC_000962 2051282 2052688 Rv1809 PPE family protein -NC_000962 2061178 2062674 Rv1818c PE-PGRS family protein -NC_000962 2073943 2074437 Rv1829 50bp_duplicated -NC_000962 2087971 2089518 Rv1840c PE-PGRS family protein -NC_000962 2156706 2157299 Rv1910c 50bp_duplicated -NC_000962 2157299 2157382 IG_Rv1910c-Rv1911c -NC_000962 2157382 2157987 Rv1911c 50bp_duplicated -NC_000962 2162932 2167311 Rv1917c PPE family protein -NC_000962 2167311 2167649 IG_Rv1917c-Rv1918c -NC_000962 2167649 2170612 Rv1918c PPE family protein -NC_000962 2195989 2197353 Rv1945 repeat_region -NC_000962 2226244 2227920 Rv1983 PE-PGRS family protein -NC_000962 2260665 2261144 Rv2013 transposase -NC_000962 2261098 2261688 Rv2014 transposase -NC_000962 2261688 2261816 IG_Rv2014-Rv2015c -NC_000962 2261816 2263072 Rv2015c 50bp_duplicated -NC_000962 2294531 2306986 Rv2048c 50bp_duplicated -NC_000962 2338709 2340874 Rv2082 50bp_duplicated -NC_000962 2343027 2343332 Rv2085 repeat_region -NC_000962 2347373 2348554 Rv2090 50bp_duplicated -NC_000962 2356729 2358206 Rv2098c PE-PGRS family protein -NC_000962 2365465 2365791 Rv2105 transposase -NC_000962 2365740 2366726 Rv2106 transposase -NC_000962 2366726 2367359 IG_Rv2106-Rv2107 -NC_000962 2367359 2367655 Rv2107 PE family protein -NC_000962 2367655 2367711 IG_Rv2107-Rv2108 -NC_000962 2367711 2368442 Rv2108 PPE family protein -NC_000962 2370905 2372569 Rv2112c 50bp_duplicated -NC_000962 2381071 2382492 Rv2123 PPE family protein -NC_000962 2387202 2387972 Rv2126c PE-PGRS family protein -NC_000962 2423240 2424838 Rv2162c PE-PGRS family protein -NC_000962 2430159 2431145 Rv2167c transposase -NC_000962 2431094 2431420 Rv2168c transposase -NC_000962 2439282 2439947 Rv2177c transposase -NC_000962 2459678 2461327 Rv2196 50bp_duplicated -NC_000962 2530836 2531897 Rv2258c 50bp_duplicated -NC_000962 2549124 2550029 Rv2277c 50bp_duplicated -NC_000962 2550029 2550065 IG_Rv2277c-Rv2278 -NC_000962 2550065 2550391 Rv2278 transposase -NC_000962 2550340 2551326 Rv2279 transposase -NC_000962 2600731 2601879 Rv2328 PE family protein -NC_000962 2617667 2618908 Rv2340c PE-PGRS family protein -NC_000962 2625888 2626172 Rv2346c 50bp_duplicated -NC_000962 2626172 2626223 IG_Rv2346c-Rv2347c -NC_000962 2626223 2626519 Rv2347c 50bp_duplicated -NC_000962 2632923 2634098 Rv2352c PPE family protein -NC_000962 2634098 2634528 IG_Rv2352c-Rv2353c -NC_000962 2634528 2635592 Rv2353c PPE family protein -NC_000962 2635592 2635628 IG_Rv2353c-Rv2354 -NC_000962 2635628 2635954 Rv2354 transposase -NC_000962 2635903 2636889 Rv2355 transposase -NC_000962 2636889 2637688 IG_Rv2355-Rv2356c -NC_000962 2637688 2639535 Rv2356c PPE family protein -NC_000962 2651753 2651938 Rv2371 PE-PGRS family protein -NC_000962 2692799 2693884 Rv2396 PE-PGRS family protein -NC_000962 2706017 2706736 Rv2408 PE family protein -NC_000962 2720776 2721777 Rv2424c transposase -NC_000962 2727336 2727920 Rv2430c PPE family protein -NC_000962 2727920 2727967 IG_Rv2430c-Rv2431c -NC_000962 2727967 2728266 Rv2431c PE family protein -NC_000962 2762531 2763175 Rv2460c repeat_region -NC_000962 2763172 2763774 Rv2461c repeat_region -NC_000962 2784657 2785643 Rv2479c transposase -NC_000962 2785592 2785918 Rv2480c transposase -NC_000962 2795301 2797385 Rv2487c PE-PGRS family protein -NC_000962 2800846 2801145 Rv2489c repeat_region -NC_000962 2801145 2801254 IG_Rv2489c-Rv2490c -NC_000962 2801254 2806236 Rv2490c PE-PGRS family protein -NC_000962 2828556 2829803 Rv2512c IS1081 transposase -NC_000962 2835785 2837263 Rv2519 PE family protein -NC_000962 2866468 2867127 Rv2543 50bp_duplicated -NC_000962 2867124 2867786 Rv2544 50bp_duplicated -NC_000962 2921551 2923182 Rv2591 PE-PGRS family protein -NC_000962 2935046 2936788 Rv2608 PPE family protein -NC_000962 2943600 2944985 Rv2615c PE-PGRS family protein -NC_000962 2960105 2962441 Rv2634c PE-PGRS family protein -NC_000962 2972160 2972486 Rv2648 transposase IS6110 -NC_000962 2972435 2973421 Rv2649 transposase IS6110 -NC_000962 2973421 2973795 IG_Rv2649-Rv2650c -NC_000962 2973795 2975234 Rv2650c phiRv2 prophage protein -NC_000962 2975234 2975242 IG_Rv2650c-Rv2651c -NC_000962 2975242 2975775 Rv2651c phiRv2 prophage protease -NC_000962 2975775 2975928 IG_Rv2651c-Rv2652c -NC_000962 2975928 2976554 Rv2652c phiRv2 prophage protein -NC_000962 2976554 2976586 IG_Rv2652c-Rv2653c -NC_000962 2976586 2976909 Rv2653c phiRv2 prophage protein -NC_000962 2976909 2976989 IG_Rv2653c-Rv2654c -NC_000962 2976989 2977234 Rv2654c phiRv2 prophage protein -NC_000962 2977231 2978658 Rv2655c phiRv2 prophage protein -NC_000962 2978658 2978660 IG_Rv2655c-Rv2656c -NC_000962 2978660 2979052 Rv2656c phiRv2 prophage protein -NC_000962 2979049 2979309 Rv2657c phiRv2 prophage protein -NC_000962 2979691 2980818 Rv2659c phiRv2 prophage integrase -NC_000962 2982699 2982980 Rv2665 50bp_duplicated -NC_000962 2982980 2983071 IG_Rv2665-Rv2666 -NC_000962 2983071 2983874 Rv2666 truncated IS1081 transposase -NC_000962 2989291 2990592 Rv2673 50bp_duplicated -NC_000962 2996105 2996737 Rv2680 50bp_duplicated -NC_000962 3005845 3007062 Rv2689c 50bp_duplicated -NC_000962 3007062 3007236 IG_Rv2689c-Rv2690c -NC_000962 3007236 3009209 Rv2690c repeat_region -NC_000962 3053914 3055491 Rv2741 PE-PGRS family protein -NC_000962 3076894 3078078 Rv2768c PPE family protein -NC_000962 3078078 3078158 IG_Rv2768c-Rv2769c -NC_000962 3078158 3078985 Rv2769c PE family protein -NC_000962 3078985 3079309 IG_Rv2769c-Rv2770c -NC_000962 3079309 3080457 Rv2770c PPE family protein -NC_000962 3082352 3082756 Rv2774c 50bp_duplicated -NC_000962 3100202 3101581 Rv2791c transposase -NC_000962 3101581 3102162 Rv2792c resolvase -NC_000962 3112867 3113271 Rv2805 50bp_duplicated -NC_000962 3113658 3114812 Rv2807 50bp_duplicated -NC_000962 3115741 3116142 Rv2810c transposase -NC_000962 3116818 3118227 Rv2812 transposase -NC_000962 3120566 3121552 Rv2814c transposase -NC_000962 3121501 3121827 Rv2815c transposase -NC_000962 3132892 3133539 Rv2825c 50bp_duplicated -NC_000962 3135788 3136333 Rv2828c 50bp_duplicated -NC_000962 3162268 3164115 Rv2853 PE-PGRS family protein -NC_000962 3170720 3171646 Rv2859c 50bp_duplicated -NC_000962 3191644 3192201 Rv2882c 50bp_duplicated -NC_000962 3194166 3195548 Rv2885c transposase -NC_000962 3195545 3196432 Rv2886c resolvase -NC_000962 3200794 3202020 Rv2892c PPE family protein -NC_000962 3245445 3251075 Rv2931 50bp_duplicated -NC_000962 3251072 3255688 Rv2932 50bp_duplicated -NC_000962 3288464 3289705 Rv2943 IS1533 transposase -NC_000962 3289705 3290235 Rv2943A transposase -NC_000962 3289790 3290506 Rv2944 IS1533 transposase -NC_000962 3313283 3313672 Rv2961 transposase -NC_000962 3318816 3318900 IG3012_Rv2965c-Rv2966c -NC_000962 3319468 3319662 IG3013_Rv2966c-Rv2967c -NC_000962 3332787 3333788 Rv2977c 50bp_duplicated -NC_000962 3333785 3335164 Rv2978c transposase -NC_000962 3335164 3335748 Rv2979c resolvase -NC_000962 3335748 3335960 IG_Rv2979c-Rv2980 -NC_000962 3335960 3336505 Rv2980 50bp_duplicated -NC_000962 3376939 3378243 Rv3018c PPE family protein -NC_000962 3378243 3378329 IG_Rv3018c-Rv3018A -NC_000962 3378329 3378415 Rv3018A PE family protein -NC_000962 3379376 3380452 Rv3021c PPE family protein -NC_000962 3380440 3380682 Rv3022c PPE family protein -NC_000962 3380679 3380993 Rv3022A PE family protein -NC_000962 3380993 3381375 IG_Rv3022A-Rv3023c -NC_000962 3381375 3382622 Rv3023c transposase -NC_000962 3465778 3467091 Rv3097c PE-PGRS family protein -NC_000962 3481451 3482698 Rv3115 transposase -NC_000962 3490476 3491651 Rv3125c PPE family protein -NC_000962 3501334 3501732 Rv3135 PPE family protein -NC_000962 3501732 3501794 IG_Rv3135-Rv3136 -NC_000962 3501794 3502936 Rv3136 PPE family protein -NC_000962 3510088 3511317 Rv3144c PPE family protein -NC_000962 3527391 3529163 Rv3159c PPE family protein -NC_000962 3551281 3551607 Rv3184 transposase -NC_000962 3551556 3552542 Rv3185 transposase -NC_000962 3552542 3552764 IG_Rv3185-Rv3186 -NC_000962 3552764 3553090 Rv3186 transposase -NC_000962 3553039 3554025 Rv3187 transposase -NC_000962 3557311 3558345 Rv3191c transposase -NC_000962 3663689 3664222 Rv3281 50bp_duplicated -NC_000962 3710433 3710759 Rv3325 transposase -NC_000962 3710708 3711694 Rv3326 transposase -NC_000962 3711694 3711749 IG_Rv3326-Rv3327 -NC_000962 3711749 3713461 Rv3327 transposase -NC_000962 3729364 3736935 Rv3343c PPE family protein -NC_000962 3736935 3736984 IG_Rv3343c-Rv3344c -NC_000962 3736984 3738438 Rv3344c PE-PGRS family protein -NC_000962 3738158 3742774 Rv3345c PE-PGRS family protein -NC_000962 3742774 3743198 IG_Rv3345c-Rv3346c -NC_000962 3743198 3743455 Rv3346c 50bp_duplicated -NC_000962 3743455 3743711 IG_Rv3346c-Rv3347c -NC_000962 3743711 3753184 Rv3347c PPE family protein -NC_000962 3753184 3753765 IG_Rv3347c-Rv3348 -NC_000962 3753765 3754256 Rv3348 transposase -NC_000962 3754256 3754293 IG_Rv3348-Rv3349c -NC_000962 3754293 3755033 Rv3349c transposase -NC_000962 3755033 3755952 IG_Rv3349c-Rv3350c -NC_000962 3755952 3767102 Rv3350c PPE family protein -NC_000962 3769514 3769807 Rv3355c 50bp_duplicated -NC_000962 3778568 3780334 Rv3367 PE-PGRS family protein -NC_000962 3795100 3796086 Rv3380c transposase -NC_000962 3796035 3796361 Rv3381c transposase -NC_000962 3800092 3800796 Rv3386 transposase -NC_000962 3800786 3801463 Rv3387 transposase -NC_000962 3801463 3801653 IG_Rv3387-Rv3388 -NC_000962 3801653 3803848 Rv3388 PE-PGRS family protein -NC_000962 3841714 3842076 Rv3424c 50bp_duplicated -NC_000962 3842076 3842239 IG_Rv3424c-Rv3425 -NC_000962 3842239 3842769 Rv3425 PPE family protein -NC_000962 3842769 3843036 IG_Rv3425-Rv3426 -NC_000962 3843036 3843734 Rv3426 PPE family protein -NC_000962 3843734 3843885 IG_Rv3426-Rv3427c -NC_000962 3843885 3844640 Rv3427c transposase -NC_000962 3844640 3844738 IG_Rv3427c-Rv3428c -NC_000962 3844738 3845970 Rv3428c transposase -NC_000962 3845970 3847165 IG_Rv3428c-Rv3429 -NC_000962 3847165 3847701 Rv3429 PPE family protein -NC_000962 3847642 3848805 Rv3430c transposase -NC_000962 3848805 3849294 IG_Rv3430c-Rv3431c -NC_000962 3849294 3850139 Rv3431c repeat_region -NC_000962 3883525 3884193 Rv3466 repeat_region -NC_000962 3883964 3884917 Rv3467 repeat_region -NC_000962 3890830 3891156 Rv3474 transposase IS6110 -NC_000962 3891105 3892091 Rv3475 transposase IS6110 -NC_000962 3894093 3894389 Rv3477 PE family protein -NC_000962 3894389 3894426 IG_Rv3477-Rv3478 -NC_000962 3894426 3895607 Rv3478 PE family protein -NC_000962 3926569 3930714 Rv3507 PE-PGRS family protein -NC_000962 3930714 3931005 IG_Rv3507-Rv3508 -NC_000962 3931005 3936710 Rv3508 PE-PGRS family protein -NC_000962 3939617 3941761 Rv3511 PE-PGRS family protein -NC_000962 3941724 3944963 Rv3512 PE-PGRS family protein -NC_000962 3944963 3945092 IG_Rv3512-Rv3513c -NC_000962 3945092 3945748 Rv3513c 50bp_duplicated -NC_000962 3945748 3945794 IG_Rv3513c-Rv3514 -NC_000962 3945794 3950263 Rv3514 PE-PGRS family protein -NC_000962 3950263 3950824 IG_Rv3514-Rv3515c -NC_000962 3950824 3952470 Rv3515c 50bp_duplicated -NC_000962 3969343 3970563 Rv3532 PPE family protein -NC_000962 3970563 3970705 IG_Rv3532-Rv3533c -NC_000962 3970705 3972453 Rv3533c PPE family protein -NC_000962 3978059 3979498 Rv3539 PPE family protein -NC_000962 3997980 3999638 Rv3558 PPE family protein -NC_000962 4031404 4033158 Rv3590c PE-PGRS family protein -NC_000962 4036731 4038050 Rv3595c PE-PGRS family protein -NC_000962 4052950 4053603 Rv3611 50bp_duplicated -NC_000962 4059984 4060268 Rv3619c 50bp_duplicated -NC_000962 4060268 4060295 IG_Rv3619c-Rv3620c -NC_000962 4060295 4060591 Rv3620c 50bp_duplicated -NC_000962 4060591 4060648 IG_Rv3620c-Rv3621c -NC_000962 4060648 4061889 Rv3621c PPE family protein -NC_000962 4061889 4061899 IG_Rv3621c-Rv3622c -NC_000962 4061899 4062198 Rv3622c PE family protein -NC_000962 4075752 4076099 Rv3636 transposase -NC_000962 4076099 4076484 IG_Rv3636-Rv3637 -NC_000962 4076484 4076984 Rv3637 transposase -NC_000962 4076984 4077730 Rv3638 transposase -NC_000962 4077730 4077884 IG_Rv3638-Rv3639c -NC_000962 4077884 4078450 Rv3639c 50bp_duplicated -NC_000962 4078450 4078520 IG_Rv3639c-Rv3640c -NC_000962 4078520 4079749 Rv3640c transposase -NC_000962 4091233 4091517 Rv3650 PE family protein -NC_000962 4093632 4093946 Rv3652 PE-PGRS family protein -NC_000962 4093940 4094527 Rv3653PE-PGRS family protein -NC_000962 4119795 4120955 Rv3680 50bp_duplicated -NC_000962 4153740 4155674 Rv3710 50bp_duplicated -NC_000962 4189285 4190232 Rv3738c PPE family protein -NC_000962 4190232 4190284 IG_Rv3738c-Rv3739c -NC_000962 4190284 4190517 Rv3739c PPE family protein -NC_000962 4196171 4196506 Rv3746c PE family protein -NC_000962 4252993 4254327 Rv3798 transposase -NC_000962 4276571 4278085 Rv3812 PE-PGRS family protein -NC_000962 4299812 4301566 Rv3826 50bp_duplicated -NC_000962 4301563 4302789 Rv3827c transposase -NC_000962 4302786 4303397 Rv3828c resolvase -NC_000962 4318775 4319266 Rv3844 transposase -NC_000962 4351075 4352181 Rv3873 PPE family protein -NC_000962 4353010 4355010 Rv3876 50bp_duplicated -NC_000962 4374484 4375683 Rv3892c PPE family protein -NC_000962 4375683 4375762 IG_Rv3892c-Rv3893c -NC_000962 4375762 4375995 Rv3893c PE family protein +Chrom ChromStart ChromEnd locus tag Comment +NC_000962 23181 23269 IG18_Rv0018c-Rv0019c +NC_000962 33581 33794 Rv0031 remnant of A transposase +NC_000962 80193 80623 IG71_Rv0071-Rv0072 +NC_000962 103709 104663 Rv0094c 50bp_duplicated +NC_000962 104662 104805 IG_Rv0094c-Rv0095c +NC_000962 104804 105215 Rv0095c 50bp_duplicated +NC_000962 105214 105324 IG_Rv0095c-Rv0096 +NC_000962 105323 106715 Rv0096 PPE family protein +NC_000962 131381 132872 Rv0109 PE-PGRS family protein +NC_000962 149532 150996 Rv0124 PE-PGRS family protein +NC_000962 154129 154231 IG127_Rv0126-Rv0127 +NC_000962 177542 179309 Rv0151c PE family protein +NC_000962 179308 179319 IG_Rv0151c-Rv0152c +NC_000962 179318 180896 Rv0152c PE family protein +NC_000962 187432 188839 Rv0159c PE family protein +NC_000962 188838 188931 IG_Rv0159c-Rv0160c +NC_000962 188930 190439 Rv0160c PE family protein +NC_000962 307876 309547 Rv0256c PPE family protein +NC_000962 309546 309699 IG_Rv0256c-Rv0257 +NC_000962 309698 310073 Rv0257 50bp_duplicated +NC_000962 332707 333136 Rv0277c 50bp_duplicated +NC_000962 333135 333437 IG_Rv0277c-Rv0278c +NC_000962 333436 336310 Rv0278c PE-PGRS family protein +NC_000962 336309 336560 IG_Rv0278c-Rv0279c +NC_000962 336559 339073 Rv0279c PE-PGRS family protein +NC_000962 339072 339364 IG_Rv0279c-Rv0280 +NC_000962 339363 340974 Rv0280 PPE family protein +NC_000962 349623 349932 Rv0285 PE family protein +NC_000962 349934 351476 Rv0286 PPE family protein +NC_000962 361333 363109 Rv0297 PE-PGRS family protein +NC_000962 366149 372764 Rv0304c PPE family protein +NC_000962 372763 372820 IG_Rv0304c-Rv0305c +NC_000962 372819 375711 Rv0305c PPE family protein +NC_000962 399534 400050 Rv0335c PE family protein +NC_000962 400049 400192 IG_Rv0335c-Rv0336 +NC_000962 400191 401703 Rv0336 50bp_duplicated +NC_000962 423638 424019 Rv0353 50bp_duplicated +NC_000962 424018 424269 IG_Rv0353-Rv0354c +NC_000962 424268 424694 Rv0354c PPE family protein +NC_000962 424693 424777 IG_Rv0354c-Rv0355c +NC_000962 424776 434679 Rv0355c PPE family protein +NC_000962 466671 467406 Rv0387c PPE family protein +NC_000962 467405 467459 IG_Rv0387c-Rv0388c +NC_000962 467458 468001 Rv0388c PPE family protein +NC_000962 472780 474106 Rv0393 50bp_duplicated +NC_000962 475815 476184 Rv0397 50bp_duplicated +NC_000962 530750 532214 Rv0442c PPE family protein +NC_000962 543173 544730 Rv0453 PPE family protein +NC_000962 576786 577338 Rv0487 50bp_duplicated +NC_000962 579348 580581 Rv0490 50bp_duplicated +NC_000962 606550 608062 Rv0515 50bp_duplicated +NC_000962 616831 616845 IG533_Rv0525-Rv0526 +NC_000962 622792 624577 Rv0532 PE-PGRS family protein +NC_000962 630039 631686 Rv0538 50bp_duplicated +NC_000962 642811 642888 IG559_Rv0551c-Rv0552 +NC_000962 671995 675916 Rv0578c PE-PGRS family protein +NC_000962 701405 702014 Rv0605 repeat region +NC_000962 706929 706947 IG622_Rv0612-Rv0613c +NC_000962 831775 832303 Rv0740 50bp_duplicated +NC_000962 832302 832534 IG_Rv0740-Rv0741 +NC_000962 832533 832848 Rv0741 transposase +NC_000962 832847 832981 IG_Rv0741-Rv0742 +NC_000962 832980 833508 Rv0742 PE-PGRS family protein +NC_000962 835700 838052 Rv0746 PE-PGRS family protein +NC_000962 838051 838451 IG_Rv0746-Rv0747 +NC_000962 838450 840856 Rv0747 PE-PGRS family protein +NC_000962 842032 842278 Rv0750 50bp_duplicated +NC_000962 846158 847913 Rv0754 PE-PGRS family protein +NC_000962 847912 850527 IG_Rv0754-Rv0755A +NC_000962 848102 850040 Rv0755c PPE family protein +NC_000962 850341 850527 Rv0755A transposase +NC_000962 863158 863255 IG784_Rv0769-Rv0770 +NC_000962 889071 889398 Rv0795 transposase IS6110 +NC_000962 889346 890333 Rv0796 transposase IS6110 +NC_000962 889346 889398 IG_Rv0795-Rv0796 +NC_000962 890332 890388 IG_Rv0796-Rv0797 +NC_000962 890387 891482 Rv0797 50bp_duplicated +NC_000962 908180 908483 Rv0814c 50bp_duplicated +NC_000962 916476 917646 Rv0823c 50bp_duplicated +NC_000962 921574 921865 Rv0829 50bp_duplicated +NC_000962 924950 925364 Rv0832 PE-PGRS family protein +NC_000962 925360 927610 Rv0833 PE-PGRS family protein +NC_000962 927609 927837 IG_Rv0833-Rv0834c +NC_000962 927836 930485 Rv0834c PE-PGRS family protein +NC_000962 947311 947644 Rv0850 transposase +NC_000962 960151 960341 IG877_Rv0861c-Rv0862c +NC_000962 964311 965535 Rv0867c 50bp_duplicated +NC_000962 968423 970244 Rv0872c PE-PGRS family protein +NC_000962 976871 978203 Rv0878c PPE family protein +NC_000962 1020057 1021329 Rv0915c PPE family protein +NC_000962 1021328 1021344 IG_Rv0915c-Rv0916c +NC_000962 1021343 1021643 Rv0916c PE family protein +NC_000962 1025496 1026816 Rv0920c transposase +NC_000962 1026815 1027104 IG_Rv0920c-Rv0921 +NC_000962 1027103 1027685 Rv0921 resolvase +NC_000962 1027684 1029337 Rv0922 transposase +NC_000962 1090372 1093144 Rv0977 PE-PGRS family protein +NC_000962 1093143 1093361 IG_Rv0977-Rv0978c +NC_000962 1093360 1094356 Rv0978c PE-PGRS family protein +NC_000962 1095077 1096451 Rv0980c PE-PGRS family protein +NC_000962 1158917 1159307 Rv1034c transposase +NC_000962 1159306 1159375 IG_Rv1034c-Rv1035c +NC_000962 1159374 1160061 Rv1035c transposase +NC_000962 1160060 1160095 IG_Rv1035c-Rv1036c +NC_000962 1160094 1160433 Rv1036c truncated IS1560 transposase +NC_000962 1160432 1160544 IG_Rv1036c-Rv1037c +NC_000962 1160543 1160828 Rv1037c 50bp_duplicated +NC_000962 1160827 1160855 IG_Rv1037c-Rv1038c +NC_000962 1160854 1161151 Rv1038c 50bp_duplicated +NC_000962 1161150 1161297 IG_Rv1038c-Rv1039c +NC_000962 1161296 1162472 Rv1039c PPE family protein +NC_000962 1162471 1162549 IG_Rv1039c-Rv1040c +NC_000962 1162548 1163376 Rv1040c PE family protein +NC_000962 1163375 1164572 IG_Rv1040c-Rv1041c +NC_000962 1164571 1165435 Rv1041c IS like-2 transposase +NC_000962 1165091 1165499 Rv1042c IS like-2 transposase +NC_000962 1169422 1170670 Rv1047 transposase +NC_000962 1188420 1190424 Rv1067c PE-PGRS family protein +NC_000962 1190423 1190757 IG_Rv1067c-Rv1068c +NC_000962 1190756 1192148 Rv1068c PE-PGRS family protein +NC_000962 1211559 1213863 Rv1087 PE-PGRS family protein +NC_000962 1213862 1214513 IG_Rv1087-Rv1088 +NC_000962 1214512 1214947 Rv1088 PE family protein +NC_000962 1214768 1215131 Rv1089 PE family protein +NC_000962 1216468 1219030 Rv1091 PE-PGRS family protein +NC_000962 1251616 1252972 Rv1128c repeat_region +NC_000962 1262271 1264128 Rv1135c PPE family protein +NC_000962 1276299 1277748 Rv1148c 50bp_duplicated +NC_000962 1277747 1277893 IG_Rv1148c-Rv1149 +NC_000962 1277892 1278300 Rv1149 transposase +NC_000962 1278268 1278820 Rv1150 Possible fragment of transposase +NC_000962 1298763 1299804 Rv1168c PPE family protein +NC_000962 1299803 1299822 IG_Rv1168c-Rv1169c +NC_000962 1299821 1300124 Rv1169c PE family protein +NC_000962 1301754 1302681 Rv1172c PE family protein +NC_000962 1306001 1306201 IG1195_Rv1174c-Rv1175c +NC_000962 1339002 1339302 Rv1195 PE family protein +NC_000962 1339301 1339349 IG_Rv1195-Rv1196 +NC_000962 1339348 1340524 Rv1196 PPE family protein +NC_000962 1340523 1340659 IG_Rv1196-Rv1197 +NC_000962 1340658 1340955 Rv1197 50bp_duplicated +NC_000962 1340954 1341006 IG_Rv1197-Rv1198 +NC_000962 1341005 1341290 Rv1198 50bp_duplicated +NC_000962 1341289 1341358 IG_Rv1198-Rv1199c +NC_000962 1341357 1342605 Rv1199c transposase +NC_000962 1357292 1357625 Rv1214c PE family protein +NC_000962 1384988 1386677 Rv1243c PE-PGRS family protein +NC_000962 1441347 1442718 Rv1288 50bp_duplicated +NC_000962 1450696 1451779 Rv1295 50bp_duplicated +NC_000962 1468170 1469505 Rv1313c transposase +NC_000962 1479198 1480824 Rv1318c 50bp_duplicated +NC_000962 1480823 1480894 IG_Rv1318c-Rv1319c +NC_000962 1480893 1482501 Rv1319c 50bp_duplicated +NC_000962 1488153 1489965 Rv1325c PE-PGRS family protein +NC_000962 1532442 1533633 Rv1361c PPE family protein +NC_000962 1541993 1542980 Rv1369c transposase +NC_000962 1542928 1543255 Rv1370c transposase +NC_000962 1561463 1561772 Rv1386 PE family protein +NC_000962 1561768 1563388 Rv1387 PPE family protein +NC_000962 1572126 1573857 Rv1396c PE-PGRS family protein +NC_000962 1606385 1607972 Rv1430 PE family protein +NC_000962 1618208 1619684 Rv1441c PE-PGRS family protein +NC_000962 1630637 1634627 Rv1450c PE-PGRS family protein +NC_000962 1636003 1638229 Rv1452c PE-PGRS family protein +NC_000962 1643318 1644260 Rv1458c 50bp_duplicated +NC_000962 1655608 1656721 Rv1468c PE-PGRS family protein +NC_000962 1678941 1679172 Rv1489A 50bp_duplicated +NC_000962 1684004 1686257 Rv1493 50bp_duplicated +NC_000962 1751296 1753333 Rv1548c PPE family protein +NC_000962 1761743 1762937 Rv1557 repeat_region +NC_000962 1762936 1762947 IG_Rv1557-Rv1558 +NC_000962 1762946 1763393 Rv1558 repeat_region +NC_000962 1779193 1779298 Rv1572c repeat_region +NC_000962 1779297 1779314 IG_Rv1572c-Rv1573 +NC_000962 1779313 1779724 Rv1573 phiRV1 phage protein +NC_000962 1779723 1779930 IG_Rv1573-Rv1574 +NC_000962 1779929 1780241 Rv1574 repeat_region +NC_000962 1779929 1780241 Rv1574 phiRV1 phage related protein +NC_000962 1780198 1780699 Rv1575 repeat_region +NC_000962 1780198 1780699 Rv1575 phiRV1 phage protein +NC_000962 1780642 1782064 Rv1576c phiRV1 phage protein +NC_000962 1782063 1782072 IG_Rv1576c-Rv1577c +NC_000962 1782071 1782584 Rv1577c phiRv1 phage protein +NC_000962 1782583 1782758 IG_Rv1577c-Rv1578c +NC_000962 1782757 1783228 Rv1578c phiRv1 phage protein +NC_000962 1783227 1783309 IG_Rv1578c-Rv1579c +NC_000962 1783308 1783623 Rv1579c phiRv1 phage protein +NC_000962 1783619 1783892 Rv1580c phiRv1 phage protein +NC_000962 1783891 1783906 IG_Rv1580c-Rv1581c +NC_000962 1783905 1784301 Rv1581c phiRv1 phage protein +NC_000962 1784300 1784497 IG_Rv1581c-Rv1582c +NC_000962 1784496 1785912 Rv1582c phiRv1 phage protein +NC_000962 1785911 1786310 Rv1583c phiRv1 phage protein +NC_000962 1786306 1786528 Rv1584c phiRv1 phage protein +NC_000962 1786527 1786584 IG_Rv1584c-Rv1585c +NC_000962 1786583 1787099 Rv1585c phiRv1 phage protein +NC_000962 1787095 1788505 Rv1586c phiRv1 integrase +NC_000962 1788161 1789163 Rv1587c REP13E12 repeat-containing protein +NC_000962 1789162 1789168 IG_Rv1587c-Rv1588c +NC_000962 1789167 1789836 Rv1588c REP13E12 repeat-containing protein +NC_000962 1855763 1856696 Rv1646 PE family protein +NC_000962 1862346 1865382 Rv1651c PE-PGRS family protein +NC_000962 1907320 1907593 IG1711_Rv1682-Rv1683 +NC_000962 1927210 1928575 Rv1702c repeat_region +NC_000962 1931496 1932654 Rv1705c PPE family protein +NC_000962 1932653 1932694 IG_Rv1705c-Rv1706c +NC_000962 1932693 1933878 Rv1706c PPE family protein +NC_000962 1981613 1984775 Rv1753c PPE family protein +NC_000962 1987744 1988731 Rv1756c putative transposase +NC_000962 1988679 1989006 Rv1757c putative transposase +NC_000962 1989005 1989042 IG_Rv1757c-Rv1758 +NC_000962 1989041 1989566 Rv1758 putative transposase +NC_000962 1989565 1989833 IG_Rv1758-Rv1759c +NC_000962 1989832 1992577 Rv1759c PE-PGRS family protein +NC_000962 1996151 1996478 Rv1763 putative transposase +NC_000962 1996426 1997413 Rv1764 putative transposase +NC_000962 1997412 1997418 IG_Rv1764-Rv1765c +NC_000962 1997417 1998515 Rv1765c 50bp_duplicated +NC_000962 1998514 1999142 IG_Rv1765c-Rv1765A +NC_000962 1999141 1999357 Rv1765A transposase +NC_000962 2000613 2002470 Rv1768 PE-PGRS family protein +NC_000962 2025300 2026398 Rv1787 PPE family protein +NC_000962 2026397 2026477 IG_Rv1787-Rv1788 +NC_000962 2026476 2026776 Rv1788 PE family protein +NC_000962 2026775 2026790 IG_Rv1788-Rv1789 +NC_000962 2026789 2027971 Rv1789 PPE family protein +NC_000962 2027970 2028425 IG_Rv1789-Rv1790 +NC_000962 2028424 2029477 Rv1790 PPE family protein +NC_000962 2029476 2029904 IG_Rv1790-Rv1791 +NC_000962 2029903 2030203 Rv1791 PE family protein +NC_000962 2030693 2030978 Rv1793 50bp_duplicated +NC_000962 2039452 2041420 Rv1800 PPE family protein +NC_000962 2041419 2042001 IG_Rv1800-Rv1801 +NC_000962 2042000 2043272 Rv1801 PPE family protein +NC_000962 2043271 2043384 IG_Rv1801-Rv1802 +NC_000962 2043383 2044775 Rv1802 PPE family protein +NC_000962 2044774 2044923 IG_Rv1802-Rv1803c +NC_000962 2044922 2046842 Rv1803c PE-PGRS family protein +NC_000962 2048071 2048371 Rv1806 PE family protein +NC_000962 2048370 2048398 IG_Rv1806-Rv1807 +NC_000962 2048397 2049597 Rv1807 PPE family protein +NC_000962 2049596 2049921 IG_Rv1807-Rv1808 +NC_000962 2049920 2051150 Rv1808 PPE family protein +NC_000962 2051149 2051282 IG_Rv1808-Rv1809 +NC_000962 2051281 2052688 Rv1809 PPE family protein +NC_000962 2061177 2062674 Rv1818c PE-PGRS family protein +NC_000962 2073942 2074437 Rv1829 50bp_duplicated +NC_000962 2087970 2089518 Rv1840c PE-PGRS family protein +NC_000962 2156705 2157299 Rv1910c 50bp_duplicated +NC_000962 2157298 2157382 IG_Rv1910c-Rv1911c +NC_000962 2157381 2157987 Rv1911c 50bp_duplicated +NC_000962 2162931 2167311 Rv1917c PPE family protein +NC_000962 2167310 2167649 IG_Rv1917c-Rv1918c +NC_000962 2167648 2170612 Rv1918c PPE family protein +NC_000962 2195988 2197353 Rv1945 repeat_region +NC_000962 2226243 2227920 Rv1983 PE-PGRS family protein +NC_000962 2260664 2261144 Rv2013 transposase +NC_000962 2261097 2261688 Rv2014 transposase +NC_000962 2261687 2261816 IG_Rv2014-Rv2015c +NC_000962 2261815 2263072 Rv2015c 50bp_duplicated +NC_000962 2294530 2306986 Rv2048c 50bp_duplicated +NC_000962 2338708 2340874 Rv2082 50bp_duplicated +NC_000962 2343026 2343332 Rv2085 repeat_region +NC_000962 2347372 2348554 Rv2090 50bp_duplicated +NC_000962 2356728 2358206 Rv2098c PE-PGRS family protein +NC_000962 2365464 2365791 Rv2105 transposase +NC_000962 2365739 2366726 Rv2106 transposase +NC_000962 2366725 2367359 IG_Rv2106-Rv2107 +NC_000962 2367358 2367655 Rv2107 PE family protein +NC_000962 2367654 2367711 IG_Rv2107-Rv2108 +NC_000962 2367710 2368442 Rv2108 PPE family protein +NC_000962 2370904 2372569 Rv2112c 50bp_duplicated +NC_000962 2381070 2382492 Rv2123 PPE family protein +NC_000962 2387201 2387972 Rv2126c PE-PGRS family protein +NC_000962 2423239 2424838 Rv2162c PE-PGRS family protein +NC_000962 2430158 2431145 Rv2167c transposase +NC_000962 2431093 2431420 Rv2168c transposase +NC_000962 2439281 2439947 Rv2177c transposase +NC_000962 2459677 2461327 Rv2196 50bp_duplicated +NC_000962 2530835 2531897 Rv2258c 50bp_duplicated +NC_000962 2549123 2550029 Rv2277c 50bp_duplicated +NC_000962 2550028 2550065 IG_Rv2277c-Rv2278 +NC_000962 2550064 2550391 Rv2278 transposase +NC_000962 2550339 2551326 Rv2279 transposase +NC_000962 2600730 2601879 Rv2328 PE family protein +NC_000962 2617666 2618908 Rv2340c PE-PGRS family protein +NC_000962 2625887 2626172 Rv2346c 50bp_duplicated +NC_000962 2626171 2626223 IG_Rv2346c-Rv2347c +NC_000962 2626222 2626519 Rv2347c 50bp_duplicated +NC_000962 2632922 2634098 Rv2352c PPE family protein +NC_000962 2634097 2634528 IG_Rv2352c-Rv2353c +NC_000962 2634527 2635592 Rv2353c PPE family protein +NC_000962 2635591 2635628 IG_Rv2353c-Rv2354 +NC_000962 2635627 2635954 Rv2354 transposase +NC_000962 2635902 2636889 Rv2355 transposase +NC_000962 2636888 2637688 IG_Rv2355-Rv2356c +NC_000962 2637687 2639535 Rv2356c PPE family protein +NC_000962 2651752 2651938 Rv2371 PE-PGRS family protein +NC_000962 2692798 2693884 Rv2396 PE-PGRS family protein +NC_000962 2706016 2706736 Rv2408 PE family protein +NC_000962 2720775 2721777 Rv2424c transposase +NC_000962 2727335 2727920 Rv2430c PPE family protein +NC_000962 2727919 2727967 IG_Rv2430c-Rv2431c +NC_000962 2727966 2728266 Rv2431c PE family protein +NC_000962 2762530 2763175 Rv2460c repeat_region +NC_000962 2763171 2763774 Rv2461c repeat_region +NC_000962 2784656 2785643 Rv2479c transposase +NC_000962 2785591 2785918 Rv2480c transposase +NC_000962 2795300 2797385 Rv2487c PE-PGRS family protein +NC_000962 2800845 2801145 Rv2489c repeat_region +NC_000962 2801144 2801254 IG_Rv2489c-Rv2490c +NC_000962 2801253 2806236 Rv2490c PE-PGRS family protein +NC_000962 2828555 2829803 Rv2512c IS1081 transposase +NC_000962 2835784 2837263 Rv2519 PE family protein +NC_000962 2866467 2867127 Rv2543 50bp_duplicated +NC_000962 2867123 2867786 Rv2544 50bp_duplicated +NC_000962 2921550 2923182 Rv2591 PE-PGRS family protein +NC_000962 2935045 2936788 Rv2608 PPE family protein +NC_000962 2943599 2944985 Rv2615c PE-PGRS family protein +NC_000962 2960104 2962441 Rv2634c PE-PGRS family protein +NC_000962 2972159 2972486 Rv2648 transposase IS6110 +NC_000962 2972434 2973421 Rv2649 transposase IS6110 +NC_000962 2973420 2973795 IG_Rv2649-Rv2650c +NC_000962 2973794 2975234 Rv2650c phiRv2 prophage protein +NC_000962 2975233 2975242 IG_Rv2650c-Rv2651c +NC_000962 2975241 2975775 Rv2651c phiRv2 prophage protease +NC_000962 2975774 2975928 IG_Rv2651c-Rv2652c +NC_000962 2975927 2976554 Rv2652c phiRv2 prophage protein +NC_000962 2976553 2976586 IG_Rv2652c-Rv2653c +NC_000962 2976585 2976909 Rv2653c phiRv2 prophage protein +NC_000962 2976908 2976989 IG_Rv2653c-Rv2654c +NC_000962 2976988 2977234 Rv2654c phiRv2 prophage protein +NC_000962 2977230 2978658 Rv2655c phiRv2 prophage protein +NC_000962 2978657 2978660 IG_Rv2655c-Rv2656c +NC_000962 2978659 2979052 Rv2656c phiRv2 prophage protein +NC_000962 2979048 2979309 Rv2657c phiRv2 prophage protein +NC_000962 2979690 2980818 Rv2659c phiRv2 prophage integrase +NC_000962 2982698 2982980 Rv2665 50bp_duplicated +NC_000962 2982979 2983071 IG_Rv2665-Rv2666 +NC_000962 2983070 2983874 Rv2666 truncated IS1081 transposase +NC_000962 2989290 2990592 Rv2673 50bp_duplicated +NC_000962 2996104 2996737 Rv2680 50bp_duplicated +NC_000962 3005844 3007062 Rv2689c 50bp_duplicated +NC_000962 3007061 3007236 IG_Rv2689c-Rv2690c +NC_000962 3007235 3009209 Rv2690c repeat_region +NC_000962 3053913 3055491 Rv2741 PE-PGRS family protein +NC_000962 3076893 3078078 Rv2768c PPE family protein +NC_000962 3078077 3078158 IG_Rv2768c-Rv2769c +NC_000962 3078157 3078985 Rv2769c PE family protein +NC_000962 3078984 3079309 IG_Rv2769c-Rv2770c +NC_000962 3079308 3080457 Rv2770c PPE family protein +NC_000962 3082351 3082756 Rv2774c 50bp_duplicated +NC_000962 3100201 3101581 Rv2791c transposase +NC_000962 3101580 3102162 Rv2792c resolvase +NC_000962 3112866 3113271 Rv2805 50bp_duplicated +NC_000962 3113657 3114812 Rv2807 50bp_duplicated +NC_000962 3115740 3116142 Rv2810c transposase +NC_000962 3116817 3118227 Rv2812 transposase +NC_000962 3120565 3121552 Rv2814c transposase +NC_000962 3121500 3121827 Rv2815c transposase +NC_000962 3132891 3133539 Rv2825c 50bp_duplicated +NC_000962 3135787 3136333 Rv2828c 50bp_duplicated +NC_000962 3162267 3164115 Rv2853 PE-PGRS family protein +NC_000962 3170719 3171646 Rv2859c 50bp_duplicated +NC_000962 3191643 3192201 Rv2882c 50bp_duplicated +NC_000962 3194165 3195548 Rv2885c transposase +NC_000962 3195544 3196432 Rv2886c resolvase +NC_000962 3200793 3202020 Rv2892c PPE family protein +NC_000962 3245444 3251075 Rv2931 50bp_duplicated +NC_000962 3251071 3255688 Rv2932 50bp_duplicated +NC_000962 3288463 3289705 Rv2943 IS1533 transposase +NC_000962 3289704 3290235 Rv2943A transposase +NC_000962 3289789 3290506 Rv2944 IS1533 transposase +NC_000962 3313282 3313672 Rv2961 transposase +NC_000962 3318815 3318900 IG3012_Rv2965c-Rv2966c +NC_000962 3319467 3319662 IG3013_Rv2966c-Rv2967c +NC_000962 3332786 3333788 Rv2977c 50bp_duplicated +NC_000962 3333784 3335164 Rv2978c transposase +NC_000962 3335163 3335748 Rv2979c resolvase +NC_000962 3335747 3335960 IG_Rv2979c-Rv2980 +NC_000962 3335959 3336505 Rv2980 50bp_duplicated +NC_000962 3376938 3378243 Rv3018c PPE family protein +NC_000962 3378242 3378329 IG_Rv3018c-Rv3018A +NC_000962 3378328 3378415 Rv3018A PE family protein +NC_000962 3379375 3380452 Rv3021c PPE family protein +NC_000962 3380439 3380682 Rv3022c PPE family protein +NC_000962 3380678 3380993 Rv3022A PE family protein +NC_000962 3380992 3381375 IG_Rv3022A-Rv3023c +NC_000962 3381374 3382622 Rv3023c transposase +NC_000962 3465777 3467091 Rv3097c PE-PGRS family protein +NC_000962 3481450 3482698 Rv3115 transposase +NC_000962 3490475 3491651 Rv3125c PPE family protein +NC_000962 3501333 3501732 Rv3135 PPE family protein +NC_000962 3501731 3501794 IG_Rv3135-Rv3136 +NC_000962 3501793 3502936 Rv3136 PPE family protein +NC_000962 3510087 3511317 Rv3144c PPE family protein +NC_000962 3527390 3529163 Rv3159c PPE family protein +NC_000962 3551280 3551607 Rv3184 transposase +NC_000962 3551555 3552542 Rv3185 transposase +NC_000962 3552541 3552764 IG_Rv3185-Rv3186 +NC_000962 3552763 3553090 Rv3186 transposase +NC_000962 3553038 3554025 Rv3187 transposase +NC_000962 3557310 3558345 Rv3191c transposase +NC_000962 3663688 3664222 Rv3281 50bp_duplicated +NC_000962 3710432 3710759 Rv3325 transposase +NC_000962 3710707 3711694 Rv3326 transposase +NC_000962 3711693 3711749 IG_Rv3326-Rv3327 +NC_000962 3711748 3713461 Rv3327 transposase +NC_000962 3729363 3736935 Rv3343c PPE family protein +NC_000962 3736934 3736984 IG_Rv3343c-Rv3344c +NC_000962 3736983 3738438 Rv3344c PE-PGRS family protein +NC_000962 3738157 3742774 Rv3345c PE-PGRS family protein +NC_000962 3742773 3743198 IG_Rv3345c-Rv3346c +NC_000962 3743197 3743455 Rv3346c 50bp_duplicated +NC_000962 3743454 3743711 IG_Rv3346c-Rv3347c +NC_000962 3743710 3753184 Rv3347c PPE family protein +NC_000962 3753183 3753765 IG_Rv3347c-Rv3348 +NC_000962 3753764 3754256 Rv3348 transposase +NC_000962 3754255 3754293 IG_Rv3348-Rv3349c +NC_000962 3754292 3755033 Rv3349c transposase +NC_000962 3755032 3755952 IG_Rv3349c-Rv3350c +NC_000962 3755951 3767102 Rv3350c PPE family protein +NC_000962 3769513 3769807 Rv3355c 50bp_duplicated +NC_000962 3778567 3780334 Rv3367 PE-PGRS family protein +NC_000962 3795099 3796086 Rv3380c transposase +NC_000962 3796034 3796361 Rv3381c transposase +NC_000962 3800091 3800796 Rv3386 transposase +NC_000962 3800785 3801463 Rv3387 transposase +NC_000962 3801462 3801653 IG_Rv3387-Rv3388 +NC_000962 3801652 3803848 Rv3388 PE-PGRS family protein +NC_000962 3841713 3842076 Rv3424c 50bp_duplicated +NC_000962 3842075 3842239 IG_Rv3424c-Rv3425 +NC_000962 3842238 3842769 Rv3425 PPE family protein +NC_000962 3842768 3843036 IG_Rv3425-Rv3426 +NC_000962 3843035 3843734 Rv3426 PPE family protein +NC_000962 3843733 3843885 IG_Rv3426-Rv3427c +NC_000962 3843884 3844640 Rv3427c transposase +NC_000962 3844639 3844738 IG_Rv3427c-Rv3428c +NC_000962 3844737 3845970 Rv3428c transposase +NC_000962 3845969 3847165 IG_Rv3428c-Rv3429 +NC_000962 3847164 3847701 Rv3429 PPE family protein +NC_000962 3847641 3848805 Rv3430c transposase +NC_000962 3848804 3849294 IG_Rv3430c-Rv3431c +NC_000962 3849293 3850139 Rv3431c repeat_region +NC_000962 3883524 3884193 Rv3466 repeat_region +NC_000962 3883963 3884917 Rv3467 repeat_region +NC_000962 3890829 3891156 Rv3474 transposase IS6110 +NC_000962 3891104 3892091 Rv3475 transposase IS6110 +NC_000962 3894092 3894389 Rv3477 PE family protein +NC_000962 3894388 3894426 IG_Rv3477-Rv3478 +NC_000962 3894425 3895607 Rv3478 PE family protein +NC_000962 3926568 3930714 Rv3507 PE-PGRS family protein +NC_000962 3930713 3931005 IG_Rv3507-Rv3508 +NC_000962 3931004 3936710 Rv3508 PE-PGRS family protein +NC_000962 3939616 3941761 Rv3511 PE-PGRS family protein +NC_000962 3941723 3944963 Rv3512 PE-PGRS family protein +NC_000962 3944962 3945092 IG_Rv3512-Rv3513c +NC_000962 3945091 3945748 Rv3513c 50bp_duplicated +NC_000962 3945747 3945794 IG_Rv3513c-Rv3514 +NC_000962 3945793 3950263 Rv3514 PE-PGRS family protein +NC_000962 3950262 3950824 IG_Rv3514-Rv3515c +NC_000962 3950823 3952470 Rv3515c 50bp_duplicated +NC_000962 3969342 3970563 Rv3532 PPE family protein +NC_000962 3970562 3970705 IG_Rv3532-Rv3533c +NC_000962 3970704 3972453 Rv3533c PPE family protein +NC_000962 3978058 3979498 Rv3539 PPE family protein +NC_000962 3997979 3999638 Rv3558 PPE family protein +NC_000962 4031403 4033158 Rv3590c PE-PGRS family protein +NC_000962 4036730 4038050 Rv3595c PE-PGRS family protein +NC_000962 4052949 4053603 Rv3611 50bp_duplicated +NC_000962 4059983 4060268 Rv3619c 50bp_duplicated +NC_000962 4060267 4060295 IG_Rv3619c-Rv3620c +NC_000962 4060294 4060591 Rv3620c 50bp_duplicated +NC_000962 4060590 4060648 IG_Rv3620c-Rv3621c +NC_000962 4060647 4061889 Rv3621c PPE family protein +NC_000962 4061888 4061899 IG_Rv3621c-Rv3622c +NC_000962 4061898 4062198 Rv3622c PE family protein +NC_000962 4075751 4076099 Rv3636 transposase +NC_000962 4076098 4076484 IG_Rv3636-Rv3637 +NC_000962 4076483 4076984 Rv3637 transposase +NC_000962 4076983 4077730 Rv3638 transposase +NC_000962 4077729 4077884 IG_Rv3638-Rv3639c +NC_000962 4077883 4078450 Rv3639c 50bp_duplicated +NC_000962 4078449 4078520 IG_Rv3639c-Rv3640c +NC_000962 4078519 4079749 Rv3640c transposase +NC_000962 4091232 4091517 Rv3650 PE family protein +NC_000962 4093631 4093946 Rv3652 PE-PGRS family protein +NC_000962 4093939 4094527 Rv3653PE-PGRS family protein +NC_000962 4119794 4120955 Rv3680 50bp_duplicated +NC_000962 4153739 4155674 Rv3710 50bp_duplicated +NC_000962 4189284 4190232 Rv3738c PPE family protein +NC_000962 4190231 4190284 IG_Rv3738c-Rv3739c +NC_000962 4190283 4190517 Rv3739c PPE family protein +NC_000962 4196170 4196506 Rv3746c PE family protein +NC_000962 4252992 4254327 Rv3798 transposase +NC_000962 4276570 4278085 Rv3812 PE-PGRS family protein +NC_000962 4299811 4301566 Rv3826 50bp_duplicated +NC_000962 4301562 4302789 Rv3827c transposase +NC_000962 4302785 4303397 Rv3828c resolvase +NC_000962 4318774 4319266 Rv3844 transposase +NC_000962 4351074 4352181 Rv3873 PPE family protein +NC_000962 4353009 4355010 Rv3876 50bp_duplicated +NC_000962 4374483 4375683 Rv3892c PPE family protein +NC_000962 4375682 4375762 IG_Rv3892c-Rv3893c +NC_000962 4375761 4375995 Rv3893c PE family protein