preprocessing/modules.json at main · nf-cmgg/preprocessing · GitHub

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{
    "name": "nf-cmgg/preprocessing",
    "homePage": "https://github.com/nf-cmgg/preprocessing",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "bclconvert": {
                        "branch": "master",
                        "git_sha": "e4a7e011bee58ded839f4da6bf9bb3fbfbebdebd",
                        "installed_by": ["modules"]
                    },
                    "biobambam/bamsormadup": {
                        "branch": "master",
                        "git_sha": "aef75083111cea684bafb6c27cdba8a8d0916638",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/biobambam/bamsormadup/biobambam-bamsormadup.diff"
                    },
                    "bowtie2/align": {
                        "branch": "master",
                        "git_sha": "92b8df948fd8cdb223e051f5f5e414818a073ee0",
                        "installed_by": ["fastq_align_dna", "modules"],
                        "patch": "modules/nf-core/bowtie2/align/bowtie2-align.diff"
                    },
                    "bwa/mem": {
                        "branch": "master",
                        "git_sha": "707241c72951f24fd89982c4c80c5983a4c437ef",
                        "installed_by": ["fastq_align_dna"],
                        "patch": "modules/nf-core/bwa/mem/bwa-mem.diff"
                    },
                    "bwamem2/mem": {
                        "branch": "master",
                        "git_sha": "8325a8155a77a336a613a504b8e4d6cea7a2344a",
                        "installed_by": ["fastq_align_dna"],
                        "patch": "modules/nf-core/bwamem2/mem/bwamem2-mem.diff"
                    },
                    "dragmap/align": {
                        "branch": "master",
                        "git_sha": "9fd8df2d3e0cd7add065a5c59dd1e9841a907e13",
                        "installed_by": ["fastq_align_dna"],
                        "patch": "modules/nf-core/dragmap/align/dragmap-align.diff"
                    },
                    "falco": {
                        "branch": "master",
                        "git_sha": "b2f164ca59b14d6e9ed2dd2a99fa015085396faf",
                        "installed_by": ["modules"]
                    },
                    "fastp": {
                        "branch": "master",
                        "git_sha": "a331ecfd1aa48b2b2298aab23bb4516c800e410b",
                        "installed_by": ["modules"]
                    },
                    "gnu/sort": {
                        "branch": "master",
                        "git_sha": "5e748ff2b0f990949081c9e49792622eb3fe9ee9",
                        "installed_by": ["modules"]
                    },
                    "md5sum": {
                        "branch": "master",
                        "git_sha": "7df444999424fb148e251c4de5140296c9356f54",
                        "installed_by": ["modules"]
                    },
                    "mosdepth": {
                        "branch": "master",
                        "git_sha": "6832b69ef7f98c54876d6436360b6b945370c615",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/mosdepth/mosdepth.diff"
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "2c73cc8fa92cf48de3da0b643fdf357a8a290b36",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/multiqc/multiqc.diff"
                    },
                    "multiqcsav": {
                        "branch": "master",
                        "git_sha": "2c73cc8fa92cf48de3da0b643fdf357a8a290b36",
                        "installed_by": ["modules"]
                    },
                    "picard/collecthsmetrics": {
                        "branch": "master",
                        "git_sha": "a631e12055f6c23ba2c942d3902b3ed1b9eed859",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/picard/collecthsmetrics/picard-collecthsmetrics.diff"
                    },
                    "picard/collectmultiplemetrics": {
                        "branch": "master",
                        "git_sha": "a631e12055f6c23ba2c942d3902b3ed1b9eed859",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/picard/collectmultiplemetrics/picard-collectmultiplemetrics.diff"
                    },
                    "picard/collectwgsmetrics": {
                        "branch": "master",
                        "git_sha": "a631e12055f6c23ba2c942d3902b3ed1b9eed859",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/picard/collectwgsmetrics/picard-collectwgsmetrics.diff"
                    },
                    "samtools/convert": {
                        "branch": "master",
                        "git_sha": "51fa714751883254ede046c50acf20076b46ca81",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/samtools/convert/samtools-convert.diff"
                    },
                    "samtools/coverage": {
                        "branch": "master",
                        "git_sha": "440edf75d8782913115a7b72a88392a227f72cc1",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/samtools/coverage/samtools-coverage.diff"
                    },
                    "samtools/flagstat": {
                        "branch": "master",
                        "git_sha": "1d2fbdcbca677bbe8da0f9d0d2bb7c02f2cab1c9",
                        "installed_by": ["modules"]
                    },
                    "samtools/idxstats": {
                        "branch": "master",
                        "git_sha": "1d2fbdcbca677bbe8da0f9d0d2bb7c02f2cab1c9",
                        "installed_by": ["modules"]
                    },
                    "samtools/sormadup": {
                        "branch": "master",
                        "git_sha": "0043d7ccd6b7278cd566db278c2f6ceb937e04ba",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/samtools/sormadup/samtools-sormadup.diff"
                    },
                    "samtools/sort": {
                        "branch": "master",
                        "git_sha": "5cb9a8694da0a0e550921636bb60bc8c56445fd7",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/samtools/sort/samtools-sort.diff"
                    },
                    "samtools/stats": {
                        "branch": "master",
                        "git_sha": "fe93fde0845f907fc91ad7cc7d797930408824df",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/samtools/stats/samtools-stats.diff"
                    },
                    "snapaligner/align": {
                        "branch": "master",
                        "git_sha": "cf0eb2bed12c39c5b714d44dd02039a0cefaedb1",
                        "installed_by": ["fastq_align_dna", "modules"],
                        "patch": "modules/nf-core/snapaligner/align/snapaligner-align.diff"
                    },
                    "star/align": {
                        "branch": "master",
                        "git_sha": "cebe21bbd158c15c8fab172e37cfe97a239f4b77",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/star/align/star-align.diff"
                    },
                    "strobealign": {
                        "branch": "master",
                        "git_sha": "698af1c52555faeba677dfafc6d0197a840ca81f",
                        "installed_by": ["fastq_align_dna", "modules"],
                        "patch": "modules/nf-core/strobealign/strobealign.diff"
                    }
                }
            },
            "subworkflows": {
                "nf-core": {
                    "fastq_align_dna": {
                        "branch": "master",
                        "git_sha": "9afa0584136287aa20fc18296f45f103c0c4e69a",
                        "installed_by": ["subworkflows"],
                        "patch": "subworkflows/nf-core/fastq_align_dna/fastq_align_dna.diff"
                    },
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "f0b535b3ae20080f8db03dd5388876ad1ec29d70",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "fdc08b8b1ae74f56686ce21f7ea11ad11990ce57",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}