From a6b79d916ce9830ec3bfe274895b679ce5a0f547 Mon Sep 17 00:00:00 2001
From: ThomasSte01 <thomas.stevens@student.howest.be>
Date: Tue, 27 May 2025 09:04:17 +0200
Subject: [PATCH] Changed MultiQC variant  to Multiqc_CMGG

---
 assets/multiqc_config.yml | 2 ++
 conf/modules.config       | 1 +
 2 files changed, 3 insertions(+)

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index e315a35..8e6ce04 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -44,3 +44,5 @@ custom_plot_config:
     defaultsort:
     - column: "Best match LOD"
       direction: asc
+
+template: "cmgg"
\ No newline at end of file
diff --git a/conf/modules.config b/conf/modules.config
index 98dd94d..47230ad 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -63,6 +63,7 @@ process {
     }
 
     withName: 'MULTIQC_MAIN' {
+        container = 'quay.io/cmgg/multiqc_cmgg:0.0.2dev'
         ext.args   = { params.multiqc_title ? "--title \"$params.multiqc_title\"" : '' }
         publishDir = [
             path: { "${params.outdir}/multiqc" },