Skip to content

Wrong capture of hash with filterNextflowOutput #58

@maxulysse

Description

@maxulysse

This error message:

WARN: FASTQ file(/home/runner/tests/dbcf29769b30ade963f50358dd930f12/work/7b/b7421f705229baeb721b87806b97ed/test_1.fastq.gz): Cannot extract flowcell ID from @normal#21#998579#1/1

Get saved as:

WARN: FASTQ file([PATH]/tests/[NFT_HASH]/work/22/[NFT_HASH]/test_R1_R2_R1.fastq.gz): Cannot extract flowcell ID from @normal#21#998579#1/1

Instead of:

WARN: FASTQ file([PATH]/tests/[NFT_HASH]/work/[NFT_HASH]/test_R1_R2_R1.fastq.gz): Cannot extract flowcell ID from @normal#21#998579#1/1

Which results in non reproducible results

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions