diff --git a/Manuscript/stitch.R b/Manuscript/stitch.R index 3fb764f..5a65b79 100755 --- a/Manuscript/stitch.R +++ b/Manuscript/stitch.R @@ -24,11 +24,11 @@ for( i in 1:length( rmdFiles ) ) cat( rmdFiles[i] ) if( i == 1 ) { - cmd <- paste( "type", rmdFiles[i], ">", stitchedFile ) + cmd <- paste( "cat", rmdFiles[i], ">", stitchedFile ) } else { - cmd <- paste( "type", rmdFiles[i], ">>", stitchedFile ) + cmd <- paste( "cat", rmdFiles[i], ">>", stitchedFile ) } - shell( cmd ) + system( cmd ) } cat( '\n Pandoc rendering', stitchedFile, '\n' ) diff --git a/Manuscript/stitch_win.R b/Manuscript/stitch_win.R new file mode 100644 index 0000000..3fb764f --- /dev/null +++ b/Manuscript/stitch_win.R @@ -0,0 +1,37 @@ +library( rmarkdown ) +library( ggplot2 ) + +stitchedFile <- "stitched.md" + +rmdFiles <- c( "format.md", + "titlePage.md", + "abstract.md", + "intro.md", + "introAnts.md", + "resultsAllen.md", + "resultsDevCCF.md", + "resultsKK.md", + "discussion.md", + "methods.md", + "data_availability.md", + "acknowledgments.md", + "author_contributions.md", + "references.md" + ) + +for( i in 1:length( rmdFiles ) ) + { + cat( rmdFiles[i] ) + if( i == 1 ) + { + cmd <- paste( "type", rmdFiles[i], ">", stitchedFile ) + } else { + cmd <- paste( "type", rmdFiles[i], ">>", stitchedFile ) + } + shell( cmd ) + } + +cat( '\n Pandoc rendering', stitchedFile, '\n' ) +render( stitchedFile, pdf_document( number_sections = TRUE, pandoc_args = "--variable=subparagraph" ) ) +render( stitchedFile, latex_document() ) +