From 4124eef9399c9f6091da0d752a7b75be1b2690fe Mon Sep 17 00:00:00 2001 From: "claude[bot]" <41898282+claude[bot]@users.noreply.github.com> Date: Tue, 28 Apr 2026 05:11:45 +0000 Subject: [PATCH 1/2] Add new term UBERON:9900001 guttural pouch (#3346) Adds the term 'guttural pouch' as part_of pharyngotympanic tube. The guttural pouches are paired ventral diverticulae of the auditory (eustachian) tube, present in horses, tapirs, rhinoceroses, hyraxes, some bats and a South American mouse. Definition sourced from Wikipedia and the Color Atlas of Veterinary Anatomy: The Horse (ISBN:978-0721649610). Contributed by Katie Mullen (ORCID 0000-0002-5002-8648) per issue #3346. Signed-off-by: @dragon-ai-agent Co-Authored-By: Claude Opus 4.7 --- src/ontology/uberon-edit.obo | 15 +++++++++++++++ 1 file changed, 15 insertions(+) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index aad698cbe..e6f75b53f 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -225183,6 +225183,21 @@ is_a: UBERON:0006914 ! squamous epithelium relationship: has_part CL:4030023 ! respiratory tract hillock cell relationship: part_of UBERON:0007196 ! tracheobronchial tree +[Term] +id: UBERON:9900001 +name: guttural pouch +def: "A paired ventral diverticulum of the auditory (pharyngotympanic) tube, formed by escape of the mucosal lining of the tube through a relatively long ventral slit in the supporting cartilages. The pouches are normally air filled and in the domestic horse can have a capacity of 300-500ml." [ISBN:978-0721649610, Wikipedia:Guttural_pouch] +comment: The guttural pouch is present in members of the order Perissodactyla (nonruminant ungulates: horses, tapirs, rhinoceroses) and in a small group of other mammals including hyraxes, certain bats, and a South American mouse. +synonym: "diverticulum of the auditory tube" EXACT [] +synonym: "diverticulum of the pharyngotympanic tube" EXACT [] +xref: Wikipedia:Guttural_pouch +is_a: UBERON:0000064 ! organ part +relationship: dc-contributor https://orcid.org/0000-0002-5002-8648 +relationship: part_of UBERON:0002393 ! pharyngotympanic tube +property_value: dcterms-date "2026-04-28T05:09:28Z" xsd:dateTime +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/3346" xsd:anyURI +created_by: dragon-ai-agent + [Typedef] id: aboral_to name: aboral to From fc5317fecf64ac907f2f95efea08832450551209 Mon Sep 17 00:00:00 2001 From: "claude[bot]" <41898282+claude[bot]@users.noreply.github.com> Date: Sat, 2 May 2026 22:14:47 +0000 Subject: [PATCH 2/2] Add taxon constraints and contributor name to UBERON:9900001 guttural pouch Addresses review feedback on PR #3699: - Added `relationship: in_taxon NCBITaxon:40674 ! Mammalia` as the only-in taxon constraint, since the guttural pouch is restricted to mammals. - Added `present_in_taxon` relationships for the three mammalian groups documented in the original request (ISBN:978-0721649610): Perissodactyla (NCBITaxon:9787), Chiroptera (NCBITaxon:9397), and Hyracoidea (NCBITaxon:9810). - Added the `! Katie Mullen` name comment to the dc-contributor relationship to comply with CLAUDE.md formatting. - Added NCBITaxon:9810 (Hyracoidea) to ncbitaxon_terms.txt so the imported label survives reserialisation. Signed-off-by: @dragon-ai-agent --- src/ontology/imports/ncbitaxon_terms.txt | 1 + src/ontology/uberon-edit.obo | 6 +++++- 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/src/ontology/imports/ncbitaxon_terms.txt b/src/ontology/imports/ncbitaxon_terms.txt index d841574cc..41a8cafd0 100644 --- a/src/ontology/imports/ncbitaxon_terms.txt +++ b/src/ontology/imports/ncbitaxon_terms.txt @@ -236,6 +236,7 @@ NCBITaxon:9779 NCBITaxon:9780 NCBITaxon:9787 NCBITaxon:9788 +NCBITaxon:9810 NCBITaxon:9816 NCBITaxon:9822 NCBITaxon:9823 diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index e6f75b53f..9719833b5 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -225192,8 +225192,12 @@ synonym: "diverticulum of the auditory tube" EXACT [] synonym: "diverticulum of the pharyngotympanic tube" EXACT [] xref: Wikipedia:Guttural_pouch is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0002-5002-8648 +relationship: dc-contributor https://orcid.org/0000-0002-5002-8648 ! Katie Mullen +relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0002393 ! pharyngotympanic tube +relationship: present_in_taxon NCBITaxon:9397 {source="ISBN:978-0721649610"} ! Chiroptera +relationship: present_in_taxon NCBITaxon:9787 {source="ISBN:978-0721649610"} ! Perissodactyla +relationship: present_in_taxon NCBITaxon:9810 {source="ISBN:978-0721649610"} ! Hyracoidea property_value: dcterms-date "2026-04-28T05:09:28Z" xsd:dateTime property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/3346" xsd:anyURI created_by: dragon-ai-agent