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Merge pull request #7 from dwhswenson/travis
Travis CI setup
2 parents 9e24afb + aae9865 commit 1915097

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‎.coveragerc‎

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[report]
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omit =
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*/python?.?/*
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*/openpathsampling/*
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*/paths_cli/version.py
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*/paths_cli/_installed_version.py
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*/paths_cli/tests/*
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*/paths_cli/_installed_version.py
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*/paths_cli/version.py
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exclude_lines =
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no-cov
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def __repr__

‎.travis.yml‎

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version: ~> 1.0
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language: python
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notifications:
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webhooks: https://coveralls.io/webhook
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branches:
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only:
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- master
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- stable
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- docs
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- /^v\d+(\.\d+)+/
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env:
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global:
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- CANONICAL_PYTHON="3.8"
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- CODECLIMATE=""
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- TWINE_USERNAME="dwhswenson"
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# TWINE_PASSWORD
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# AUTORELEASE_TOKEN
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matrix:
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- CONDA_PY=3.8
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- CONDA_PY=3.6
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- CONDA_PY=3.7
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before_install:
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- echo "before install"
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- git fetch --tags
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install:
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# we use conda to manage Python versions, but all the install is pip
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- source ./devtools/miniconda_install.sh
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- conda create --yes -n ops-cli-py${CONDA_PY} python=$CONDA_PY
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- source activate ops-cli-py${CONDA_PY}
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- pip install -e .
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- pip install -r ./devtools/tests_require.txt
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- pip list
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script:
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- python -c "import paths_cli"
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- python autorelease_check.py --branch ${TRAVIS_BRANCH} --event ${TRAVIS_EVENT_TYPE} #--allow-patch-skip # allow-patch-skip if there was a testpypi problem
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- py.test -vv --cov --cov-report xml:cov.xml
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after_success:
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- COVERALLS_PARALLEL=true coveralls
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import:
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- dwhswenson/autorelease:autorelease-travis.yml@v0.1.2

‎README.md‎

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[![Build Status](https://travis-ci.com/openpathsampling/openpathsampling-cli.svg?branch=master)](https://travis-ci.com/openpathsampling/openpathsampling-cli)
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[![Coverage Status](https://coveralls.io/repos/github/openpathsampling/openpathsampling-cli/badge.svg?branch=master)](https://coveralls.io/github/openpathsampling/openpathsampling-cli?branch=master)
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[![Maintainability](https://api.codeclimate.com/v1/badges/0d1ee29e1a05cfcdc01a/maintainability)](https://codeclimate.com/github/openpathsampling/openpathsampling-cli/maintainability)
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# OpenPathSampling CLI
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*The command line interface to OpenPathSampling*
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* `strip-snapshots`: Remove coordinates/velocities from an OPS storage
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* `append`: add objects from INPUT_FILE to another file
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Full documentation is at ???; a brief summary is below.
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Full documentation is at https://openpathsampling-cli.readthedocs.io/; a brief
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summary is below.
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<!-- TODO: add TOC if the contents here get too long

‎autorelease_check.py‎

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import setup
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import paths_cli
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import autorelease
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from packaging.version import Version
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SETUP_VERSION = autorelease.version.get_setup_version(None, directory='.')
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repo_path = '.'
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versions = {
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'package': paths_cli.version.version,
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'setup.py': SETUP_VERSION,
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}
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RELEASE_BRANCHES = ['stable']
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RELEASE_TAG = "v" + Version(SETUP_VERSION).base_version
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if __name__ == "__main__":
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checker = autorelease.DefaultCheckRunner(
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versions=versions,
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setup=setup,
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repo_path='.'
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)
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checker.release_branches = RELEASE_BRANCHES + [RELEASE_TAG]
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tests = checker.select_tests_from_sysargs()
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n_fails = checker.run_as_test(tests)

‎devtools/miniconda_install.sh‎

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#!/bin/bash
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### Install Miniconda
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if [ -z "$CONDA_PY" ]
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then
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CONDA_PY=3.8
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fi
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if [ -z "$OS_ARCH" ]
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then
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OS_ARCH=Linux-x86_64
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fi
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# universal MD5 checker
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MD5_CMD=`basename $(command -v md5sum || command -v md5 || command -v openssl)`
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declare -A opts=( ["md5"]="-r" ["openssl"]="md5 -r" ["md5sum"]="" )
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MD5_OPT=" ${opts[$MD5_CMD]}"
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pyV=${CONDA_PY:0:1}
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conda_version="latest"
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#conda_version="4.4.10" # can pin a miniconda version like this, if needed
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MINICONDA=Miniconda${pyV}-${conda_version}-${OS_ARCH}.sh
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MINICONDA_MD5=$(curl -s https://repo.continuum.io/miniconda/ | grep -A3 $MINICONDA | sed -n '4p' | sed -n 's/ *<td>\(.*\)<\/td> */\1/p')
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wget https://repo.continuum.io/miniconda/$MINICONDA
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SCRIPT_MD5=`eval "$MD5_CMD $MD5_OPT $MINICONDA" | cut -d ' ' -f 1`
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if [[ $MINICONDA_MD5 != $SCRIPT_MD5 ]]; then
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echo "Miniconda MD5 mismatch"
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echo "Expected: $MINICONDA_MD5"
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echo "Found: $SCRIPT_MD5"
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exit 1
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fi
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bash $MINICONDA -b -p $HOME/miniconda${pyV}
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conda init bash
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source ~/.bashrc
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export PATH=$HOME/miniconda${pyV}/bin:$PATH
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conda update --yes conda
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rm -f $MINICONDA

‎devtools/tests_require.txt‎

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autorelease
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nose
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pytest
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pytest-cov
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coveralls

‎docs/requirements.txt‎

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cython # see if this helps MDTraj
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numpy
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sphinx-click

‎paths_cli/__init__.py‎

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from .cli import OpenPathSamplingCLI
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from . import commands
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from . import version

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