diff --git a/geofetch/_version.py b/geofetch/_version.py index 8f52a6e..b665bfc 100644 --- a/geofetch/_version.py +++ b/geofetch/_version.py @@ -1 +1 @@ -__version__ = "0.12.9" +__version__ = "0.12.10" diff --git a/geofetch/cli.py b/geofetch/cli.py index a56407c..929904a 100644 --- a/geofetch/cli.py +++ b/geofetch/cli.py @@ -238,9 +238,7 @@ def _parse_cmdl(cmdl): default=_safe_echo("SRABAM"), help="""Optional: Specify folder of bam files. Geofetch will not download sra files when corresponding bam files already exist. - [Default: $SRABAM:""" - + _safe_echo("SRABAM") - + "]", + [Default: $SRABAM:""" + _safe_echo("SRABAM") + "]", ) raw_group.add_argument( @@ -250,9 +248,7 @@ def _parse_cmdl(cmdl): default=_safe_echo("SRAFQ"), help="""Optional: Specify folder of fastq files. Geofetch will not download sra files when corresponding fastq files already exist. - [Default: $SRAFQ:""" - + _safe_echo("SRAFQ") - + "]", + [Default: $SRAFQ:""" + _safe_echo("SRAFQ") + "]", ) # Deprecated; these are for bam conversion which now happens in sra_convert diff --git a/geofetch/geofetch.py b/geofetch/geofetch.py index 5f8c66b..234d375 100755 --- a/geofetch/geofetch.py +++ b/geofetch/geofetch.py @@ -790,6 +790,7 @@ def _generate_processed_meta( meta_processed_series, pep_acc_path_exp, just_object=self.just_object, + gse_meta_dict=gse_meta_dict, ) elif self.supp_by == "samples": @@ -814,6 +815,7 @@ def _generate_processed_meta( meta_processed_series, pep_acc_path_exp, just_object=self.just_object, + gse_meta_dict=gse_meta_dict, ) return return_objects