[BUG] ’ribotricer prepare-orfs‘ Could I use the stringtie output as the reference?

[punching-samuel]

• ribotricer version:1.4.0
• Python version:3.8.19
• Operating System:x86_64 GNU/Linux

Description

What I Did

Hi~
I have met the problem that I don't know the format of gtf and fasta files to run 'ribotricer prepare-orfs --gtf {gtf_file} --fasta {transcriptome} --prefix {prefix}' if I supposed to use transcriptome as reference. I have got the stringtie output which comes from my paired bulk data.


However, it seems not work.

I also use genecode genome and gtf as reference, the projects run without any error.