Hello,
I am getting an error at the last step as mentioned below.
perl /home/troyee/EricScript/ericscript.pl --dbfolder /home/troyee/EricScript/lib/ -name CD47 -o CD47 ../Cd47_1.fastq.gz ../Cd47_2.fastq.gz
[EricScript] Starting EricScript analysis for sample CD47.
[EricScript] Aligning with bwa ...done.
[EricScript] Extracting discordant alignments ... done.
[EricScript] Building exon junction reference ... done.
[EricScript] Aligning to exon junction reference ... done.
[EricScript] Recalibrating junctions ... done.
[EricScript] Aligning to recalibrated junction reference ... done.
[EricScript] Scoring candidate fusions ...done.
[EricScript] Filtering candidate fusions ...done.
[EricScript] Writing results ... Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection
Calls: load -> readChar
In addition: Warning message:
In readChar(con, 5L, useBytes = TRUE) :
cannot open compressed file '/home/troyee/EricScript/lib/data/_resources/BlackList.RData', probable reason 'No such file or directory'
Execution halted
done.
[EricScript] Open /data/Troyee/2nd_quarantine/Fusion/ERICSCRIPT/CD47/CD47.results* to view the results of EricScript analysis.
Any suggestion on how to resolve this?
Thanks
Hello,
I am getting an error at the last step as mentioned below.
perl /home/troyee/EricScript/ericscript.pl --dbfolder /home/troyee/EricScript/lib/ -name CD47 -o CD47 ../Cd47_1.fastq.gz ../Cd47_2.fastq.gz
[EricScript] Starting EricScript analysis for sample CD47.
[EricScript] Aligning with bwa ...done.
[EricScript] Extracting discordant alignments ... done.
[EricScript] Building exon junction reference ... done.
[EricScript] Aligning to exon junction reference ... done.
[EricScript] Recalibrating junctions ... done.
[EricScript] Aligning to recalibrated junction reference ... done.
[EricScript] Scoring candidate fusions ...done.
[EricScript] Filtering candidate fusions ...done.
[EricScript] Writing results ... Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection
Calls: load -> readChar
In addition: Warning message:
In readChar(con, 5L, useBytes = TRUE) :
cannot open compressed file '/home/troyee/EricScript/lib/data/_resources/BlackList.RData', probable reason 'No such file or directory'
Execution halted
done.
[EricScript] Open /data/Troyee/2nd_quarantine/Fusion/ERICSCRIPT/CD47/CD47.results* to view the results of EricScript analysis.
Any suggestion on how to resolve this?
Thanks