Hi again,
I am encountering following error when using --shrink for some sashimi plots:
Traceback (most recent call last):
File "/mnt/scratch/Precision/CD/Lynn/SCalphaM15KD/splice/Jutils/jutils.py", line 182, in <module>
main()
File "/mnt/scratch/Precision/CD/Lynn/SCalphaM15KD/splice/Jutils/jutils.py", line 178, in main
run_sashimi_module(args, parser_dict)
File "/mnt/scratch/Precision/CD/Lynn/SCalphaM15KD/splice/Jutils/jutils.py", line 149, in run_sashimi_module
sashimi_plot_without_bams(args.tsv_file, args.meta_file, args.gtf, args.group_id,
File "/mnt/scratch/Precision/CD/Lynn/SCalphaM15KD/splice/Jutils/sashimi_utils.py", line 110, in sashimi_plot_without_bams
R_script += make_R_lists(id_list, bam_dict[strand], overlay_dict, '', intersected_introns)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/mnt/scratch/Precision/CD/Lynn/SCalphaM15KD/splice/Jutils/sashimi_utils.py", line 741, in make_R_lists
xid, yid = shrink_density(xid, yid, intersected_introns)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/mnt/scratch/Precision/CD/Lynn/SCalphaM15KD/splice/Jutils/sashimi_utils.py", line 454, in shrink_density
new_x += [int(i - shift) for i in x[start:end]]
^^^^^^^^^^^^^^
TypeError: int() argument must be a string, a bytes-like object or a real number, not 'complex'
Thank you!
Hi again,
I am encountering following error when using --shrink for some sashimi plots:
Thank you!