Using LOGP as P-Val

[C-Burden]

• PheWeb 1.3.16
• I am running Pheweb Process for a single file, and it results in an assertion error since I am using LOGP
• config.py:

hg_build_number = 38
pval_is_neglog10 = True
field_aliases = {'LOGP': 'pval'}

• Error Message:

Traceback (most recent call last):
  File "/app001/.local/lib/python3.9/site-packages/pheweb/load/parse_input_files.py", line 70, in convert
    writer.write_all(variants)
  File "/app001/.local/lib/python3.9/site-packages/pheweb/file_utils.py", line 378, in write_all
    for v in variants:
  File "/app001/.local/lib/python3.9/site-packages/pheweb/load/read_input_file.py", line 26, in get_variants
    yield from self._order_refalt_lexicographically(
  File "/app001/.local/lib/python3.9/site-packages/pheweb/load/read_input_file.py", line 59, in _order_refalt_lexicographically
    for v in sorted(tied_variants, key=lambda v:(v['ref'], v['alt'])):
  File "/app001/.local/lib/python3.9/site-packages/pheweb/load/read_input_file.py", line 141, in get_variants
    variant = self._parse_variant(values, colnames, colidx_for_field)
  File "/app001/.local/lib/python3.9/site-packages/pheweb/load/read_input_file.py", line 201, in _parse_variant
    raise PheWebError(
pheweb.utils.PheWebError: failed on field 'pval' attempting to convert value '1.00752' to type <class 'float'> with constraints {'aliases': ['PVALUE', 'P', 'P.VALUE'], 'required': True, 'type': <class 'float'>, 'nullable': True, 'range': [0, 1], 'sigfigs': 2, 'tooltip_lztemplate': {'condition': False, 'template': '{{#if pvalue|is_numeric}}P-value: <strong>{{pvalue|scinotation}}</strong><br>{{/if}}\n{{#if pval|is_numeric}}P-value: <strong>{{pval|scinotation}}</strong><br>{{/if}}'}, 'display': 'P-value', 'from_assoc_files': True} in '/app001/data/008.tsv.gz' on line with values ['1', '783125', 'A', 'G', '0.035415', '85589', '0.128243', '0.0775708', '1.00752'] given colnames ['chrom', 'pos', 'ref', 'alt', 'maf', 'n', 'beta', 'se', 'logp'] and field mapping {'chrom': 0, 'pos': 1, 'ref': 2, 'alt': 3, 'maf': 4, 'beta': 6, 'sebeta': 7, 'pval': 8}

• Sample of the GWAS file being used
  008.tsv