Currently, both imagefs_gamenative (glibc) and imagefs_bionic extract to the /data/data/app.gamenative/files/imagefs folder. This means that both cannot be installed in parallel, and we need to install one or the other when running games.
I believe this is possibly fixed by instead extracting to /data/data/app.gamenative/files/glibc/imagefs and /data/data/app.gamenative/files/bionic/imagefs, and then creating a symlink on the fly when running a game to /data/data/app.gamenative/files/imagefs