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@egrace479 egrace479 commented Jan 27, 2026

This PR pulls 4 updates from Upstream:

  • Pull from Collab Guide PR 42: Add Markdownlint action
  • Pull from Collab Guide PR 50: Repo guide README update
  • Pull from Collab Guide PR 49: Add statement about Google Drive (not for research data, models, or code)
  • Pull from Collab Guide PR 53: bugfix for markdownlint action

These are direct pulls without any edits.

EmersonFras and others added 4 commits January 27, 2026 18:47
Pull from Collab Guide [PR 42](Imageomics/Collaborative-distributed-science-guide#42)

* Adds lint.yaml with linting instructions for changed MD files

* Updates contributing.md with automated linting information

* Instructions to check details for automated check fail

* Update CONTRIBUTING.md to include lint URLs

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

---------

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>
Pull from Collab Guide [PR 50](Imageomics/Collaborative-distributed-science-guide#50)

* Add links to repos with good readmes as examples

* standardize file+extension formatting and fix typo

* Add pro-tip about the code checklist with link

* Add guiding principles for a good readme

Co-authored-by: Matt Thompson <31709066+thompsonmj@users.noreply.github.com>

* Fix formatting

* Reformulate as subsections for easier scanning

---------

Co-authored-by: Matt Thompson <31709066+thompsonmj@users.noreply.github.com>
Pull from Collab Guide [PR 49](Imageomics/Collaborative-distributed-science-guide#49)

* Add statement regarding Google Drive
clarify unreliable storage location for research products

* Include provenance tracking considerations

Co-authored-by: Hilmar Lapp <hlapp@drycafe.net>

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Co-authored-by: Hilmar Lapp <hlapp@drycafe.net>
Pull from Collab Guide [PR 53](Imageomics/Collaborative-distributed-science-guide#53)

* Include ignore in config

* test: template that should be ignored

* Specifically ignore files in lint.yaml

* test: Remove test file

* test: ensure config file is working with test md file

* test: fix extra errors in the test md file

* test: fix un-intended errors in test file

* test: cleanup

* Remove redundant yaml ignore from linter

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

---------

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>
@egrace479 egrace479 requested a review from NetZissou January 27, 2026 23:53
@egrace479 egrace479 added the src-upstream Update coming from the upstream repo label Jan 27, 2026
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Good pull thumbs up!

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Thumbs up!

@egrace479 egrace479 merged commit 8abc799 into main Jan 28, 2026
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@egrace479 egrace479 deleted the src-upstream branch January 28, 2026 20:34
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4 participants