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Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

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Organizations

@COMBINE-Canberra @bioconda @WEHI-Education

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adamtaranto/README.md

Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

  • Adamtaranto/deRIP2 - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments. (2 weeks ago)
  • WEHI-Education/Workshop-intermediate-slurm - Intermedate Slurm Workshop source code using the Software Carpentry Workbench style. (3 weeks ago)
  • WEHI-Education/Workshop-IntroToHPC-Slurm - RCP Training introducing HPC concepts and SLURM (3 weeks ago)
  • tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (3 weeks ago)
  • Adamtaranto/rusty-dot - A Python library for making fast dot-plot comparisons of DNA sequences powered by Rust FM-Index (3 weeks ago)

🔭 Latest releases I've contributed to

  • tseemann/mlst (v2.33.0, 4 days ago) - 🆔 Scan contig files against PubMLST typing schemes
  • dalofa/telomore (v0.4.1, 1 month ago) - Gotta find them telomeres
  • Adamtaranto/tSplit (v0.3.0, 1 month ago) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
  • flexidot-bio/flexidot (v2.1.0, 1 month ago) - Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  • Adamtaranto/TIRmite (v1.3.0, 2 months ago) - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.

GitHub Streak

GitHub Stats

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  1. teloclip teloclip Public

    A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

    Python 50 4

  2. TIRmite TIRmite Public

    Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.

    Python 10 4

  3. tanghaibao/jcvi tanghaibao/jcvi Public

    Python library to facilitate genome assembly, annotation, and comparative genomics

    Python 894 200

  4. flexidot-bio/flexidot flexidot-bio/flexidot Public

    Highly customizable, ambiguity-aware dotplots for visual sequence analyses

    Python 115 17

  5. pypopart pypopart Public

    Python reimplementation of PopART tool for creating haplotype networks

    Python 1