feat: JOSS submission, test suite overhaul, and strategic refactoring - #13

Merged

jameslehoux merged 10 commits into

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claude/3dxrd-tracking-week2-Bt9ed

May 17, 2026

Commits on May 17, 2026

chore: add ruff linting/formatting, CHANGELOG, py.typed, __version__
jameslehoux
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363862e
docs: add JOSS paper draft, bibliography, and CITATION.cff
jameslehoux
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7e99f9d
test: add 45 new unit tests for undertested modules
jameslehoux
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8ddfe5c
fix(notebook): clear stale outputs and fix misleading markdown
jameslehoux
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d5707f9
test: comprehensive suite improvements — error paths, invariants, integration
jameslehoux
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e6d821e
refactor: address strategic review — Otsu, ndarray, shared utils, SpotRecord
jameslehoux
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ac58ab7
fix: resolve all ruff lint errors (UP037, F821, F401, SIM117, I001, E741)
jameslehoux
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638ddb4
Add image to README for visual enhancement
jameslehoux
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7cc2fad
style: apply ruff format to 6 files
jameslehoux
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e7d78d7
fix(ci): use --output-dir instead of --output /dev/null for nbconvert
jameslehoux
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6a5e01b