The Bonham Lab at Tufts
Software for multi-'omics research
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- microbiome2function Public
A modular Python toolkit for mining UniProt protein data and converting it into machine-learning ready features. Handles everything from HUMAnN outputs to clean numerical representations (embeddings + multi-hot encodings) for downstream ML models. Features intelligent text cleaning, ESM-2 sequence embeddings, and GO/EC encoding.
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