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Center for Biologic Imaging, Univerity of Pittsburgh

Github for CBI-PITT

10 followers
United States of America
https://cbi-pitt.webflow.io/
@CBI_PITT
cbi@pitt.edu

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napari-imaris-loader napari-imaris-loader Public

Python 8 7
imaris_ims_file_reader imaris_ims_file_reader Public

Imaris file format reader

Python 15 7

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Showing 10 of 36 repositories

micro_status Public
Checking RSCM imaging and processing status

CBI-PITT/micro_status’s past year of commit activity

Python 0 0 0 1 Updated Apr 10, 2026
BrAinPI Public
Development of API for access to BIL datasets

CBI-PITT/BrAinPI’s past year of commit activity

Python 5 BSD-3-Clause 3 1 1 Updated Apr 8, 2026
mesospim_utils Public
Utilities to deal with mesospim data

CBI-PITT/mesospim_utils’s past year of commit activity

Python 0 BSD-3-Clause 0 0 1 Updated Apr 8, 2026
zarr_stores Public
A repository for development of custom zarr storage classes

CBI-PITT/zarr_stores’s past year of commit activity

Python 4 0 0 0 Updated Apr 8, 2026
omezarr_to_ims Public
A Library for presenting ome-zarr as ims files as a fuse mount

CBI-PITT/omezarr_to_ims’s past year of commit activity

Python 0 0 0 0 Updated Mar 31, 2026
ome_zarr_multiscale_writer Public
A OME Zarr writer that builds multiscales on the fly and can be used for microscope data acquisition

CBI-PITT/ome_zarr_multiscale_writer’s past year of commit activity

Python 0 0 0 0 Updated Mar 27, 2026
mesoSPIM-control Public Forked from mesoSPIM/mesoSPIM-control
Image acquisition software for mesoSPIM light-sheet microscopes.

CBI-PITT/mesoSPIM-control’s past year of commit activity

Jupyter Notebook 0 GPL-3.0 17 0 0 Updated Mar 25, 2026
sam_adapter Public
SAM Infrerence API

CBI-PITT/sam_adapter’s past year of commit activity

Python 0 0 0 0 Updated Mar 23, 2026
webknossos Public Forked from scalableminds/webknossos
Visualize, share and annotate your large 3D images online

CBI-PITT/webknossos’s past year of commit activity

TypeScript 0 AGPL-3.0 35 0 0 Updated Mar 23, 2026
micro_status_flask Public
Dashboard for microscope acquisition monitoring

CBI-PITT/micro_status_flask’s past year of commit activity

Python 0 0 0 0 Updated Feb 25, 2026

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