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CollepardoLab_Chromatin_Model
CollepardoLab_Chromatin_Model PublicSource code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome interactions".
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NucleosomeLinker
NucleosomeLinker PublicSource Code for the paper 'Nucleosome Spacing Can Fine-Tune Higher Order Chromatin Assembly'
Python 3
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OpenCGChromatin
OpenCGChromatin PublicGPU-accelerated chemically specific chromatin model
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MinimalCoacervates
MinimalCoacervates PublicScripts from our paper: Differential stability and dynamics of DNA-based and RNA-based coacervates affect non-enzymatic RNA chemistry
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Source Code for the simulations of the paper 'Linker histone H1 functions as a liquid-like glue to organize chromatin in living human cells'
CollepardoLab/Shimazoe_2026’s past year of commit activity - Huertas_2025_Oct4 Public
Source Code for the paper 'Oct4 clusters promote DNA accessibility by enhancing chromatin plasticity'
CollepardoLab/Huertas_2025_Oct4’s past year of commit activity - MinimalCoacervates Public
Scripts from our paper: Differential stability and dynamics of DNA-based and RNA-based coacervates affect non-enzymatic RNA chemistry
CollepardoLab/MinimalCoacervates’s past year of commit activity - OpenMpipi Public
CollepardoLab/OpenMpipi’s past year of commit activity - NucleosomeLinker Public
Source Code for the paper 'Nucleosome Spacing Can Fine-Tune Higher Order Chromatin Assembly'
CollepardoLab/NucleosomeLinker’s past year of commit activity - CollepardoLab_Chromatin_Model Public
Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome interactions".
CollepardoLab/CollepardoLab_Chromatin_Model’s past year of commit activity - md_patchy_model Public
CollepardoLab/md_patchy_model’s past year of commit activity
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