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Implements the predictive capabilities for 4G-HDNNPs (https://arxiv.org/abs/2009.06484)

@singraber singraber added enhancement New feature or request interface Concerns the interface to third-party software core Touches the libnnp core library labels Jan 19, 2021
@singraber singraber self-assigned this Jan 19, 2021
@singraber singraber changed the title 4G-HDNNP Prediction and LAMMPS interface [WIP] 4G-HDNNP Prediction and LAMMPS interface Jan 19, 2021
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codecov-io commented Feb 17, 2021

Codecov Report

Merging #77 (7804b5e) into master (2f05836) will decrease coverage by 3.70%.
The diff coverage is 40.02%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #77      +/-   ##
==========================================
- Coverage   71.71%   68.00%   -3.71%     
==========================================
  Files         129      135       +6     
  Lines       13954    14917     +963     
==========================================
+ Hits        10007    10145     +138     
- Misses       3947     4772     +825     
Flag Coverage Δ
cpp 73.11% <48.05%> (-1.42%) ⬇️
python 68.00% <40.02%> (-3.71%) ⬇️

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Impacted Files Coverage Δ
...nterface/LAMMPS/src/USER-NNP/pair_nnp_external.cpp 0.00% <0.00%> (ø)
src/libnnp/Atom.h 66.66% <ø> (ø)
src/libnnp/Element.cpp 79.82% <ø> (ø)
src/libnnp/Element.h 69.69% <0.00%> (-30.31%) ⬇️
src/libnnp/Kspace.cpp 0.00% <0.00%> (ø)
src/libnnp/Kspace.h 0.00% <0.00%> (ø)
src/libnnp/NeuralNetwork.h 0.00% <ø> (ø)
src/libnnp/ScreeningFunction.h 0.00% <0.00%> (ø)
src/libnnp/Structure.cpp 70.40% <0.00%> (-8.12%) ⬇️
src/libnnp/Vec3D.h 82.43% <0.00%> (-11.42%) ⬇️
... and 26 more

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@philippmisof philippmisof force-pushed the 4G-HDNNP-prediction branch 2 times, most recently from 4d4d22b to d65adf7 Compare February 23, 2021 11:37
@singraber singraber linked an issue Mar 12, 2021 that may be closed by this pull request
@singraber singraber mentioned this pull request Apr 2, 2021
@singraber singraber changed the title [WIP] 4G-HDNNP Prediction and LAMMPS interface 4G-HDNNP Prediction and LAMMPS interface Apr 14, 2021
@singraber singraber marked this pull request as draft April 14, 2021 14:49
- Reciprocal part still incorrect, k-vectors seem wrong
- Dev version, has unresolved segfaults!
- LAMMPS uses scheme with different cutoff
- With current fix EQeq is now correct
- dEQeq needs to be fixed!
- Maybe that is the limit for double precision?
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codecov-commenter commented Feb 15, 2025

⚠️ Please install the 'codecov app svg image' to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 75.17%. Comparing base (539576b) to head (ff17c66).
Report is 117 commits behind head on master.

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Additional details and impacted files
@@            Coverage Diff             @@
##           master      #77      +/-   ##
==========================================
+ Coverage   74.95%   75.17%   +0.22%     
==========================================
  Files         103      114      +11     
  Lines       13985    15804    +1819     
==========================================
+ Hits        10482    11881    +1399     
- Misses       3503     3923     +420     
Flag Coverage Δ
cpp 75.17% <ø> (+0.17%) ⬆️
python ?

Flags with carried forward coverage won't be shown. Click here to find out more.

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- Seems to work: AlAuMgO_4G, H2O_4G
- Unclear how this should work, needs fixing: carbon_chain(2)
@singraber singraber marked this pull request as ready for review March 17, 2025 11:03
@singraber singraber merged commit 29b9c9f into master Mar 17, 2025
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Implement and test sorted neighbor list

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