Codebase audit: fix wrong-result, correctness, cleanup and performance findings - #439

Merged

pastewka merged 23 commits into

masterfrom

claude/codebase-audit-163x4g

Jul 25, 2026

Commits on Jul 23, 2026

DOC: Add full codebase audit report (bugs, numerics, performance, architecture)
claude
committed
14fea9c
BUG: Fix pixel size of lazily transposed and downsampled topographies
claude
committed
0934a66
BUG: Fix silent data corruption and channel selection in file readers
claude
committed
21ed933
BUG: Fix bearing-area bounds, spurious DC mode, make_sphere and scan-line alignment
claude
committed
814e83c
BUG: Fix origin handling in nonuniform analyses and scale-dependent statistics
claude
committed
8b5573f
BUG: Fix ZAG containers reading from a closed stream
claude
committed
fcf0bda
BUG: Fix triangle/segment height moments and bicubic interpolation input handling
claude
committed
9f63e74
DOC: Mark wrong-results tier (audit section 1) as fixed
claude
committed
007aa06
MAINT: Remove accidentally committed NetCDF test artifacts
claude
committed
d3373f3
BUG: Fix analysis correctness issues under non-default options
claude
committed
35df677
BUG: Handle masked (undefined) data consistently in analysis and readers
claude
committed
bdbad97
BUILD: Drop broken pytest-flake8 and switch to the tifffile package
claude
committed
f9fb8f6
BUG: Fix crashes on valid inputs across core classes, analysis and readers
claude
committed
156340d
BUG: Fix metadata, registration and infrastructure correctness issues
claude
committed
b2e3415
BUG: Harden C++ extension: dtypes, boundaries, overflow, GIL
claude
committed
56e0ec1
DOC: Mark audit sections 2.1-2.4 as fixed
claude
committed
83b9fb9
MAINT: Remove unused import left by registration change
claude
committed
4fba2cf
Fix low-severity audit findings and add invariant tests (audit sections 3 and 4)
claude
committed
e5ff7fd
Revert meson version discovery to 'python': 'python3' breaks Windows wheels
claude
committed
3f0fa50

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Codebase audit: fix wrong-result, correctness, cleanup and performance findings - #439

Codebase audit: fix wrong-result, correctness, cleanup and performance findings#439
pastewka merged 23 commits into
masterfrom
claude/codebase-audit-163x4g

Commits on Jul 23, 2026

DOC: Add full codebase audit report (bugs, numerics, performance, architecture)

BUG: Fix pixel size of lazily transposed and downsampled topographies

BUG: Fix silent data corruption and channel selection in file readers

BUG: Fix bearing-area bounds, spurious DC mode, make_sphere and scan-line alignment

BUG: Fix origin handling in nonuniform analyses and scale-dependent statistics

BUG: Fix ZAG containers reading from a closed stream

BUG: Fix triangle/segment height moments and bicubic interpolation input handling

DOC: Mark wrong-results tier (audit section 1) as fixed

MAINT: Remove accidentally committed NetCDF test artifacts

BUG: Fix analysis correctness issues under non-default options

BUG: Handle masked (undefined) data consistently in analysis and readers

BUILD: Drop broken pytest-flake8 and switch to the tifffile package

BUG: Fix crashes on valid inputs across core classes, analysis and readers

BUG: Fix metadata, registration and infrastructure correctness issues

BUG: Harden C++ extension: dtypes, boundaries, overflow, GIL

DOC: Mark audit sections 2.1-2.4 as fixed

MAINT: Remove unused import left by registration change

Fix low-severity audit findings and add invariant tests (audit sections 3 and 4)

Revert meson version discovery to 'python': 'python3' breaks Windows wheels

Commits on Jul 25, 2026

Fix performance findings under the library's memory constraints (audit section 2.5)

Remove test_der.png, a debug artifact committed by accident

DOC: Updated ChangeLog.md

Remove AUDIT.md