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@DamLabResources

DamLabResources

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  1. outerspace outerspace Public

    A python tool for extracting short sequences from NGS data with fuzzy regular expressions.

    Python 2 2

  2. quantitative-reasoning-in-biology quantitative-reasoning-in-biology Public

    Jupyter Notebook 1

  3. cigarmath cigarmath Public

    A collection of python utilities for manipulating CIGARS.

    Python

  4. damlab-wrappers damlab-wrappers Public

    A collection of Snakemake wrappers and multiqc plugins targeted at Nanopore HIV sequence analysis.

    Python 1 1

  5. hiv-transformers hiv-transformers Public

    A collection of Hugging Face tools for analyzing HIV

    Jupyter Notebook 2

Repositories

Showing 10 of 51 repositories
  • quantitative-reasoning-in-biology Public
    DamLabResources/quantitative-reasoning-in-biology’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 5, 2026
  • damlab-skills Public

    A set of AgentSkills for bioinformatics analysis.

    DamLabResources/damlab-skills’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 2, 2026
  • damlab-wrappers Public

    A collection of Snakemake wrappers and multiqc plugins targeted at Nanopore HIV sequence analysis.

    DamLabResources/damlab-wrappers’s past year of commit activity
    Python 1 1 0 1 Updated Mar 23, 2026
  • BioinfoMCP Public Forked from florensiawidjaja/BioinfoMCP
    DamLabResources/BioinfoMCP’s past year of commit activity
    HTML 0 MIT 6 0 0 Updated Mar 12, 2026
  • cigarmath Public

    A collection of python utilities for manipulating CIGARS.

    DamLabResources/cigarmath’s past year of commit activity
    Python 0 0 0 0 Updated Mar 6, 2026
  • outerspace Public

    A python tool for extracting short sequences from NGS data with fuzzy regular expressions.

    DamLabResources/outerspace’s past year of commit activity
    Python 2 2 1 0 Updated Jan 20, 2026
  • spatial-tk Public

    A command-line toolkit for spatial transcriptomics data analysis

    DamLabResources/spatial-tk’s past year of commit activity
    Jupyter Notebook 0 2 0 1 Updated Jan 9, 2026
  • applied-biostats-helper Public

    A small collection of utilities to help with the Drexel MIIM-517 Applied Biostats class

    DamLabResources/applied-biostats-helper’s past year of commit activity
    Python 0 0 0 0 Updated Jul 22, 2025
  • collins-hiv-brainspleen Public

    The analysis code for HIV Brain/Spleen nanopore IPDA analysis

    DamLabResources/collins-hiv-brainspleen’s past year of commit activity
    0 0 0 0 Updated May 28, 2025
  • nanopore-ipda Public

    A snakemake pipleline that implements an in-silico HIV Intact Proviral DNA Assay

    DamLabResources/nanopore-ipda’s past year of commit activity
    0 MIT 0 0 0 Updated May 28, 2025
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