maintenance/merge from upstream 2024 11 25 #467
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…arg-list-after-template-kw (spack#47503)" (spack#47512) This reverts commit 4322cf5.
Co-authored-by: Patrick Bridges <patrickb314@gmail.com>
Adds version 1.0.21 of lksctp-tools
… used as flexiblas is not a depends and the entire build chain to support using flexibls is not setup. As this does not seem to be needed with the spack blas and lapack, it is easier to disable (spack#47514)
…pack#47454) Bumps [types-six](https://github.com/python/typeshed) from 1.16.21.20241009 to 1.16.21.20241105. - [Commits](https://github.com/python/typeshed/commits) --- updated-dependencies: - dependency-name: types-six dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* librdkafka: added missing dependency on curl This PR adds a missing dependency on curl in librdkafka. * librdkafka: added dependency on openssl and zlib
* benchmark: enable shared libraries by default The existing behaviour of Google Benchmark yiels static objects which are of little use for most projects. This PR changes the spec to use dynamic libraries instead. * Add shared variant
* Add 5.030 and remove the requirement to patch verilator, the problem has be fixed in this rev * Update var/spack/repos/builtin/packages/verilator/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
* mbedtls: add v2.28.9, v3.6.1 (fix CVEs) * mbedtls: add v3.6.2
…pack#47353) * lua: add +pcfile support for @5.4: versions, without using a version-dependent patch * lua: always generate pcfile, remove +pcfile variant from all packages * lua: minor fixes * rpm: minor fix
`conditional()`, which defines conditional variant values, and the other ways to declare variant values should probably be in a layer above `spack.variant`. This does the simple thing and moves *just* `conditional()` to `spack.directives` to avoid a circular import. We can revisit the public variant interface later, when we split packages from core. Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl> Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
- [x] Get rid of a call to `parser.quote_if_needed()` during solver setup, which
introduces a circular import and also isn't necessary.
- [x] Rename `spack.variant.Value` to `spack.variant.ConditionalValue`, as it is *only*
used for conditional values. This makes it much easier to understand some of the
logic for variant definitions.
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
This filters any selected executable ending with `-ocl` from the list of executables being probed as candidate for external `llvm` installations. I couldn't reproduce the entire issue, but with a simple script: ``` #!/bin/bash touch foo.o echo "clang version 10.0.0-4ubuntu1 " echo "Target: x86_64-pc-linux-gnu" echo "Thread model: posix" echo "InstalledDir: /usr/bin" exit 0 ``` I noticed the executable was still probed: ``` $ spack -d compiler find /tmp/ocl [ ... ] ==> [2024-11-11-08:38:41.933618] '/tmp/ocl/bin/clang-ocl' '--version' ``` and `foo.o` was left in the working directory. With this change, instead the executable is filtered out of the list on which we run `--version`, so `clang-ocl --version` is not run by Spack.
* vbfnlo: depends on tcsh (build) * vbfnlo: add v3.0 * vbfnlo: comment Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch> --------- Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
…rovide value for --with-exodusii-lib] (spack#47506)
the py-oracledb package only has a single outdated version available in its recipe. this PR adds a much broader range of versions and their corresponding checksums. * add more versions of py-oracledb * update py-oracledb recipe * add py-cython version dependencies * tweak py-cython version dependencies * remove older versions of py-oracledb
`spack mirror add` and `set` now have flags `--oci-password-variable`, `--oci-password-variable`, `--s3-access-key-id-variable`, `--s3-access-key-secret-variable`, `--s3-access-token-variable`, which allows users to specify an environment variable in which a username or password is stored.
Storing plain text passwords in config files is considered deprecated.
The schema for mirrors.yaml has changed, notably the `access_pair` list is generally replaced with a dictionary of `{id: ..., secret_variable: ...}` or `{id_variable: ..., secret_variable: ...}`.
* butterflypack: add v3.2.0 * strumpack: add v8.0.0 * restrict fj patch to @1.2.0 * Update var/spack/repos/builtin/packages/butterflypack/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
* Move concretization tests to the same folder Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Fix for clingo-cffi --------- Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
This addresses part [1] of spack#46345 spack#44713 introduced a bug where all non-spec query parameters like date ranges, -x, etc. were ignored when an env was active. This fixes that issue and adds tests for it. --------- Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
…#47504) * py-pdm-backend: add v2.4.3 * py-starlette: add v0.28.0, v0.32.0, v0.35.1, v0.36.3, v0.37.2, v0.41.2 * py-fastapi: add v0.110.2, v0.115.4 * py-pydantic-extra-types: add v2.10.0 * py-pydantic-settings: add v2.6.1 * py-python-multipart: add v0.0.17 * py-email-validator: add v2.2.0
Permit configuring GROMACS with support for mdrun to trace its timing regions by calling the ITT API. This permits tools like VTune and unitrace to augment their analysis with GROMACS-specific annotation.
gartung
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Converted to draft while attempting to resolve style issues, including a conflict between "import" and "isort" checks. |
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caliper: add+pythonvariant withpybind11bindings (caliper: add+pythonvariant withpybind11bindings spack/spack#47031)damask(damask-mesh,damask-grid,py-damask): Add new version 3.0.1 spack/spack#47093)spack find -u(Fix brokenspack find -uspack/spack#47102)infernal: add version1.1.5(infernal: add version1.1.5spack/spack#47028)functools.partial(mypy: work around typing issues withfunctools.partialspack/spack#47160)papi(extrae: actually makepapian optional dependency spack/spack#47179)Database.query*methods (ImproveDatabase.query*methods spack/spack#47116)-tshort option forspack --backtrace(Add-tshort option forspack --backtracespack/spack#47227)develop-X.Ybranch versions spack/spack#39344)concretizer.yaml(Fix typo in defaultconcretizer.yamlspack/spack#47307)spack audit externals(Fix errors found by runningspack audit externalsspack/spack#47308)==equality (Specs: propagated variants affect==equality spack/spack#47376)cc: simplify ordered list handlingldmodemax_depthargument tofind(Improve lib search functionality spack/spack#41945)spack -c <override>when env active (Fixspack -c <override>when env active spack/spack#47403)llnl.util.filesystem.find: multiple entrypoints (llnl.util.filesystem.find: multiple entrypoints spack/spack#47436)llnl.util.filesystem.find: multiple entrypoints (llnl.util.filesystem.find: multiple entrypoints spack/spack#47436)"max_depthargument tofind(Improve lib search functionality spack/spack#41945)"spack env trackcommand (spack env trackcommand spack/spack#41897)**spack.compiler/spack.util.libc: add caching (spack.compiler/spack.util.libc: add caching spack/spack#47213)conditionaltodirectives.pyspack find -xin environments (Bugfix:spack find -xin environments spack/spack#46798)diamond,py-alive-progress,py-bakta,py-deepsig-biocomp), new packages (py-pyhmmer,py-pyrodigal) (packages: new versions (diamond,py-alive-progress,py-bakta,py-deepsig-biocomp), new packages (py-pyhmmer,py-pyrodigal) spack/spack#47277)spack spec: simplify and unify output (spack spec: simplify and unify output spack/spack#47574)spack spec: simplify and unify output (spack spec: simplify and unify output spack/spack#47574)__len__(Spec: prefer a splice-specific method to__len__spack/spack#47585)__len__(Spec: prefer a splice-specific method to__len__spack/spack#47585)spack.database.InstallStatusesinto a flag (Reworkspack.database.InstallStatusesinto a flag spack/spack#47321)spack.builder/spack.package_base/spack.directivesand add type hints to package API spack/spack#47576)executablesattribute anddetermine_versionmethod (#47438)