Edge buffering for tree sequence recording.

Working out kinks in the idea... :)

Python dependencies

• tskit
• attrs
• seaborn
• pandas

Versions used here for the important things:

• Python 3.8
• tskit 2.3 (pip3 installed from PyPi)
• attrs 19.3.0 (pip3 installed from PyPi)

C++ dependencies

• A C++ compiler with complete C++17 support. For example, GCC >= 9.1
• boost's program options library, sudo apt install libboost-program-options-dev
• GSL, sudo apt install libgsl-dev
• cmake, sudo apt install cmake
• tbb, sudo apt install libtbb-dev

The tool chain used here is:

• Pop! OS 20.04
• g++ 9.3
• boost 1.71
• gsl 2.5
• cmake 3.16.3
• tbb

All packages are the OS versions.

Building the C++ example

cmake -Bbuild -DCMAKE_BUILD_TYPE=Release
cd build
make VERBOSE=1

Substitute Debug for Release to disable optimizations and add -g.