Skip to content

Conversation

@nalinigans
Copy link
Member

Enhanced information for genomicsdb_query -w <ws> --list-fields. e.g.

./genomicsdb_query -w ws --list-fields
Field                Class      Type       Length
-----                -----      ----       ------
GQ                   FORMAT     Integer    1
GT                   FORMAT     Integer    PP
BAF                  FORMAT     Float      1
LRR                  FORMAT     Float      1
MIN_DP               FORMAT     Integer    1
PGT                  FORMAT     String     VAR
PID                  FORMAT     String     VAR
PL                   FORMAT     Integer    G
RGQ                  FORMAT     Integer    1
SB                   FORMAT     Integer    4
DS                   FORMAT     Float      1
HDS                  FORMAT     Float      2
GP                   FORMAT     Float      3
PASS                 FILTER     Integer    1
AF                   INFO       Float      A
AQ                   INFO       Integer    A
AC                   INFO       Integer    A
AN                   INFO       Integer    1
AD                   FORMAT     Integer    R
DP                   FORMAT     Integer    1
RNC                  FORMAT     Char       2
--
Abbreviations : 
  A: Number of alternate alleles
  R: Number of alleles (including reference allele)
  G: Number of possible genotypes
  PP or P: Ploidy
  VAR or var: variable length

@nalinigans nalinigans requested a review from mlathara January 23, 2025 06:36
Copy link
Member

@mlathara mlathara left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm

@nalinigans nalinigans merged commit 5b3351f into develop Jan 23, 2025
8 checks passed
@nalinigans nalinigans deleted the ng_flds branch January 23, 2025 21:31
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants