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Merged
BotellaA merged 2 commits into from
Mar 12, 2026
Merged

fix(Python): add smart holder on Identified objects #1246

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bfe51a6
fix(Python): add smart holder on Identified objects
panquez Mar 11, 2026
6754a8f
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panquez Mar 11, 2026
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5 changes: 3 additions & 2 deletions .clang-tidy
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Expand Up @@ -10,7 +10,10 @@ Checks: >
-llvm-header-guard,
-llvm-prefer-static-over-anonymous-namespace,
-misc-no-recursion,
-misc-include-cleaner,
-misc-const-correctness,
-modernize-use-trailing-return-type,
-portability-avoid-pragma-once,
-readability-redundant-access-specifiers,
-readability-convert-member-functions-to-static,
-cppcoreguidelines-avoid-const-or-ref-data-members
Expand Down Expand Up @@ -59,5 +62,3 @@ CheckOptions:
value: 10
- key: readability-function-size.ParameterThreshold
value: 4
- key: misc-include-cleaner.IgnoreHeaders
value: utility;cstddef;geode/.*_export\.h;geode/.*/common\.h;geode/basic/types\.h;geode/basic/assert\.h;
2 changes: 1 addition & 1 deletion bindings/python/src/basic/cell_array.cpp
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Expand Up @@ -28,7 +28,7 @@
#define PYTHON_ARRAY( dimension ) \
const auto name##dimension = \
"CellArray" + std::to_string( dimension ) + "D"; \
pybind11::class_< CellArray##dimension##D >( \
pybind11::class_< CellArray##dimension##D, pybind11::smart_holder >( \
module, name##dimension.c_str() ) \
.def( \
"nb_cell_neighbors", &CellArray##dimension##D::nb_cell_neighbors ) \
Expand All @@ -44,10 +44,10 @@

namespace geode
{
void define_cell_array( pybind11::module& module )

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bindings/python/src/basic/cell_array.cpp:47:10 [misc-use-internal-linkage] 

function 'define_cell_array' can be made static or moved into an anonymous namespace to enforce internal linkage
{
PYTHON_ARRAY( 1 );

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bindings/python/src/basic/cell_array.cpp:49:9 [cppcoreguidelines-pro-bounds-pointer-arithmetic] 

do not use pointer arithmetic
PYTHON_ARRAY( 2 );

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bindings/python/src/basic/cell_array.cpp:50:9 [cppcoreguidelines-pro-bounds-pointer-arithmetic] 

do not use pointer arithmetic
PYTHON_ARRAY( 3 );

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bindings/python/src/basic/cell_array.cpp:51:9 [cppcoreguidelines-pro-bounds-pointer-arithmetic] 

do not use pointer arithmetic
}
} // namespace geode
3 changes: 2 additions & 1 deletion bindings/python/src/basic/identifier.cpp
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Expand Up @@ -28,9 +28,10 @@

namespace geode
{
void define_identifier( pybind11::module& module )

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bindings/python/src/basic/identifier.cpp:31:10 [misc-use-internal-linkage] 

function 'define_identifier' can be made static or moved into an anonymous namespace to enforce internal linkage
{
pybind11::class_< Identifier >( module, "Identifier" )
pybind11::class_< Identifier, pybind11::smart_holder >(
module, "Identifier" )
.def( "id", &Identifier::id )
.def( "name", &Identifier::name );
}
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4 changes: 2 additions & 2 deletions bindings/python/src/geometry/coordinate_system.cpp
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Expand Up @@ -28,8 +28,8 @@
#define PYTHON_COORDINATE_SYSTEM( dimension ) \
const auto name##dimension = \
"CoordinateSystem" + std::to_string( dimension ) + "D"; \
pybind11::class_< CoordinateSystem##dimension##D >( \
module, name##dimension.c_str() ) \
pybind11::class_< CoordinateSystem##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( pybind11::init<>() ) \
.def( pybind11::init< std::array< Vector< dimension >, dimension >, \
Point< dimension > >() ) \
Expand All @@ -44,10 +44,10 @@

namespace geode
{
void define_coordinate_system( pybind11::module& module )

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bindings/python/src/geometry/coordinate_system.cpp:47:10 [misc-use-internal-linkage] 

function 'define_coordinate_system' can be made static or moved into an anonymous namespace to enforce internal linkage
{
PYTHON_COORDINATE_SYSTEM( 1 );

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bindings/python/src/geometry/coordinate_system.cpp:49:9 [cppcoreguidelines-pro-bounds-pointer-arithmetic] 

do not use pointer arithmetic
PYTHON_COORDINATE_SYSTEM( 2 );

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bindings/python/src/geometry/coordinate_system.cpp:50:9 [cppcoreguidelines-pro-bounds-pointer-arithmetic] 

do not use pointer arithmetic
PYTHON_COORDINATE_SYSTEM( 3 );

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bindings/python/src/geometry/coordinate_system.cpp:51:9 [cppcoreguidelines-pro-bounds-pointer-arithmetic] 

do not use pointer arithmetic
}
} // namespace geode
3 changes: 2 additions & 1 deletion bindings/python/src/image/core/raster_image.cpp
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Expand Up @@ -30,7 +30,8 @@
const auto name##dimension = \
"RasterImage" + std::to_string( dimension ) + "D"; \
pybind11::class_< RasterImage##dimension##D, CellArray##dimension##D, \
Identifier >( module, name##dimension.c_str() ) \
Identifier, pybind11::smart_holder >( \
module, name##dimension.c_str() ) \
.def( pybind11::init< std::array< index_t, dimension > >() ) \
.def( \
"native_extension", &RasterImage##dimension##D::native_extension ) \
Expand All @@ -40,7 +41,7 @@

namespace geode
{
void define_raster_image( pybind11::module& module )

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bindings/python/src/image/core/raster_image.cpp:44:10 [misc-use-internal-linkage] 

function 'define_raster_image' can be made static or moved into an anonymous namespace to enforce internal linkage
{
PYTHON_RASTER_IMAGE( 1 );
PYTHON_RASTER_IMAGE( 2 );
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/crs_managers.cpp
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Expand Up @@ -31,8 +31,8 @@
#define PYTHON_CRS_MANAGERS( dimension ) \
const auto name##dimension = "CoordinateReferenceSystemManagers" \
+ std::to_string( dimension ) + "D"; \
pybind11::class_< CoordinateReferenceSystemManagers##dimension##D >( \
module, name##dimension.c_str() ) \
pybind11::class_< CoordinateReferenceSystemManagers##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "coordinate_reference_system_manager1D", \
static_cast< const CoordinateReferenceSystemManager1D& ( \
CoordinateReferenceSystemManagers##dimension##D::*) () \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/edged_curve.cpp
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Expand Up @@ -32,8 +32,8 @@
const auto name##dimension = \
"EdgedCurve" + std::to_string( dimension ) + "D"; \
pybind11::class_< EdgedCurve##dimension##D, Graph, \
CoordinateReferenceSystemManagers##dimension##D >( \
module, name##dimension.c_str() ) \
CoordinateReferenceSystemManagers##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def_static( "create", \
static_cast< \
std::unique_ptr< EdgedCurve##dimension##D > ( * )() >( \
Expand Down
3 changes: 2 additions & 1 deletion bindings/python/src/mesh/core/graph.cpp
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Expand Up @@ -31,7 +31,8 @@ namespace geode
{
void define_graph( pybind11::module& module )
{
pybind11::class_< Graph, VertexSet >( module, "Graph" )
pybind11::class_< Graph, VertexSet, pybind11::smart_holder >(
module, "Graph" )
.def_static(
"create", static_cast< std::unique_ptr< Graph > ( * )() >(
&Graph::create ) )
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/grid.cpp
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Expand Up @@ -34,8 +34,8 @@

#define PYTHON_GRID( dimension ) \
const auto name##dimension = "Grid" + std::to_string( dimension ) + "D"; \
pybind11::class_< Grid##dimension##D, CellArray##dimension##D >( \
module, name##dimension.c_str() ) \
pybind11::class_< Grid##dimension##D, CellArray##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "grid_coordinate_system", \
&Grid##dimension##D::grid_coordinate_system ) \
.def( "nb_cell_vertices", &Grid##dimension##D::nb_cell_vertices ) \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/hybrid_solid.cpp
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Expand Up @@ -28,8 +28,8 @@
#define PYTHON_HYBRID_SOLID( dimension ) \
const auto name##dimension = \
"HybridSolid" + std::to_string( dimension ) + "D"; \
pybind11::class_< HybridSolid##dimension##D, SolidMesh##dimension##D >( \
module, name##dimension.c_str() ) \
pybind11::class_< HybridSolid##dimension##D, SolidMesh##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def_static( "create", \
static_cast< \
std::unique_ptr< HybridSolid##dimension##D > ( * )() >( \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/light_regular_grid.cpp
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Expand Up @@ -38,8 +38,8 @@ namespace
const auto class_name =
absl::StrCat( "LightRegularGrid", dimension, "D" );
pybind11::class_< geode::LightRegularGrid< dimension >,
geode::Grid< dimension >, geode::Identifier >(
module, class_name.c_str() )
geode::Grid< dimension >, geode::Identifier,
pybind11::smart_holder >( module, class_name.c_str() )
.def( pybind11::init< geode::Point< dimension >,
std::array< geode::index_t, dimension >,
std::array< double, dimension > >() )
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/point_set.cpp
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Expand Up @@ -32,8 +32,8 @@
const auto name##dimension = \
"PointSet" + std::to_string( dimension ) + "D"; \
pybind11::class_< PointSet##dimension##D, VertexSet, \
CoordinateReferenceSystemManagers##dimension##D >( \
module, name##dimension.c_str() ) \
CoordinateReferenceSystemManagers##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def_static( "create", \
static_cast< std::unique_ptr< PointSet##dimension##D > ( * )() >( \
&PointSet##dimension##D::create ) ) \
Expand Down
3 changes: 2 additions & 1 deletion bindings/python/src/mesh/core/polygonal_surface.cpp
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Expand Up @@ -29,7 +29,8 @@
const auto name##dimension = \
"PolygonalSurface" + std::to_string( dimension ) + "D"; \
pybind11::class_< PolygonalSurface##dimension##D, \
SurfaceMesh##dimension##D >( module, name##dimension.c_str() ) \
SurfaceMesh##dimension##D, pybind11::smart_holder >( \
module, name##dimension.c_str() ) \
.def_static( "create", \
static_cast< \
std::unique_ptr< PolygonalSurface##dimension##D > ( * )() >( \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/polyhedral_solid.cpp
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Expand Up @@ -28,8 +28,8 @@
#define PYTHON_POLYHEDRAL_SOLID( dimension ) \
const auto name##dimension = \
"PolyhedralSolid" + std::to_string( dimension ) + "D"; \
pybind11::class_< PolyhedralSolid##dimension##D, \
SolidMesh##dimension##D >( module, name##dimension.c_str() ) \
pybind11::class_< PolyhedralSolid##dimension##D, SolidMesh##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def_static( "create", \
static_cast< \
std::unique_ptr< PolyhedralSolid##dimension##D > ( * )() >( \
Expand Down
3 changes: 2 additions & 1 deletion bindings/python/src/mesh/core/regular_grid.cpp
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Expand Up @@ -33,7 +33,8 @@
const auto name##dimension = \
"RegularGrid" + std::to_string( dimension ) + "D"; \
pybind11::class_< RegularGrid##dimension##D, Base##dimension##D, \
Grid##dimension##D >( module, name##dimension.c_str() ) \
Grid##dimension##D, pybind11::smart_holder >( \
module, name##dimension.c_str() ) \
.def_static( "create", \
static_cast< \
std::unique_ptr< RegularGrid##dimension##D > ( * )() >( \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/solid_mesh.cpp
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Expand Up @@ -39,8 +39,8 @@
const auto name##dimension = \
"SolidMesh" + std::to_string( dimension ) + "D"; \
pybind11::class_< SolidMesh##dimension##D, VertexSet, \
CoordinateReferenceSystemManagers##dimension##D >( \
module, name##dimension.c_str() ) \
CoordinateReferenceSystemManagers##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def_static( "create", \
static_cast< std::unique_ptr< SolidMesh##dimension##D > ( * )() >( \
&SolidMesh##dimension##D::create ) ) \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/surface_mesh.cpp
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Expand Up @@ -37,8 +37,8 @@
const auto name##dimension = \
"SurfaceMesh" + std::to_string( dimension ) + "D"; \
pybind11::class_< SurfaceMesh##dimension##D, VertexSet, \
CoordinateReferenceSystemManagers##dimension##D >( \
module, name##dimension.c_str() ) \
CoordinateReferenceSystemManagers##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "are_edges_enabled", \
&SurfaceMesh##dimension##D::are_edges_enabled ) \
.def( "enable_edges", &SurfaceMesh##dimension##D::enable_edges ) \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/mesh/core/tetrahedral_solid.cpp
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Expand Up @@ -30,8 +30,8 @@
#define PYTHON_TETRAHEDRAL_SOLID( dimension ) \
const auto name##dimension = \
"TetrahedralSolid" + std::to_string( dimension ) + "D"; \
pybind11::class_< TetrahedralSolid##dimension##D, \
SolidMesh##dimension##D >( module, name##dimension.c_str() ) \
pybind11::class_< TetrahedralSolid##dimension##D, SolidMesh##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def_static( "create", \
static_cast< \
std::unique_ptr< TetrahedralSolid##dimension##D > ( * )() >( \
Expand Down
3 changes: 2 additions & 1 deletion bindings/python/src/mesh/core/triangulated_surface.cpp
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Expand Up @@ -30,7 +30,8 @@
const auto name##dimension = \
"TriangulatedSurface" + std::to_string( dimension ) + "D"; \
pybind11::class_< TriangulatedSurface##dimension##D, \
SurfaceMesh##dimension##D >( module, name##dimension.c_str() ) \
SurfaceMesh##dimension##D, pybind11::smart_holder >( \
module, name##dimension.c_str() ) \
.def_static( \
"create", static_cast< std::unique_ptr< \
TriangulatedSurface##dimension##D > ( * )() >( \
Expand Down
3 changes: 2 additions & 1 deletion bindings/python/src/mesh/core/vertex_set.cpp
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Expand Up @@ -31,7 +31,8 @@ namespace geode
{
void define_vertex_set( pybind11::module& module )
{
pybind11::class_< VertexSet, Identifier >( module, "VertexSet" )
pybind11::class_< VertexSet, Identifier, pybind11::smart_holder >(
module, "VertexSet" )
.def_static(
"create", static_cast< std::unique_ptr< VertexSet > ( * )() >(
&VertexSet::create ) )
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/model/mixin/core/block.cpp
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Expand Up @@ -31,8 +31,8 @@

#define PYTHON_BLOCK( dimension ) \
const auto name##dimension = "Block" + std::to_string( dimension ) + "D"; \
pybind11::class_< Block##dimension##D, Component##dimension##D >( \
module, name##dimension.c_str() ) \
pybind11::class_< Block##dimension##D, Component##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "mesh", &Block##dimension##D::mesh< SolidMesh##dimension##D >, \
pybind11::return_value_policy::reference ) \
.def( "polyhedral_mesh", \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/model/mixin/core/block_collection.cpp
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Expand Up @@ -28,8 +28,8 @@
#define PYTHON_BLOCK_COLLECTION( dimension ) \
const auto name##dimension = \
"BlockCollection" + std::to_string( dimension ) + "D"; \
pybind11::class_< BlockCollection##dimension##D, \
Component##dimension##D >( module, name##dimension.c_str() ) \
pybind11::class_< BlockCollection##dimension##D, Component##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "component_id", &BlockCollection##dimension##D::component_id ) \
.def_static( "component_type_static", \
&BlockCollection##dimension##D::component_type_static )
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/model/mixin/core/block_collections.cpp
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Expand Up @@ -29,8 +29,8 @@
#define PYTHON_BLOCK_COLLECTIONS( dimension ) \
const auto name##dimension = \
"BlockCollections" + std::to_string( dimension ) + "D"; \
pybind11::class_< BlockCollections##dimension##D >( \
module, name##dimension.c_str() ) \
pybind11::class_< BlockCollections##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "nb_block_collections", \
&BlockCollections##dimension##D::nb_block_collections ) \
.def( "block_collection", \
Expand Down
2 changes: 1 addition & 1 deletion bindings/python/src/model/mixin/core/blocks.cpp
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Expand Up @@ -28,7 +28,7 @@

#define PYTHON_BLOCKS( dimension ) \
const auto name##dimension = "Blocks" + std::to_string( dimension ) + "D"; \
pybind11::class_< Blocks##dimension##D >( \
pybind11::class_< Blocks##dimension##D, pybind11::smart_holder >( \
module, name##dimension.c_str() ) \
.def( "nb_blocks", &Blocks##dimension##D::nb_blocks ) \
.def( "block", &Blocks##dimension##D::block, \
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/model/mixin/core/component.cpp
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Expand Up @@ -28,8 +28,8 @@
#define PYTHON_COMPONENT( dimension ) \
const auto name##dimension = \
"Component" + std::to_string( dimension ) + "D"; \
pybind11::class_< Component##dimension##D, Identifier >( \
module, name##dimension.c_str() ) \
pybind11::class_< Component##dimension##D, Identifier, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "component_type", &Component##dimension##D::component_type )

namespace geode
Expand Down
3 changes: 2 additions & 1 deletion bindings/python/src/model/mixin/core/component_registry.cpp
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Expand Up @@ -29,7 +29,8 @@ namespace geode
{
void define_component_registry( pybind11::module& module )
{
pybind11::class_< ComponentRegistry >( module, "ComponentRegistry" )
pybind11::class_< ComponentRegistry, pybind11::smart_holder >(
module, "ComponentRegistry" )
.def( pybind11::init<>() )
.def( "mesh_components", &ComponentRegistry::mesh_components )
.def( "collection_components",
Expand Down
4 changes: 2 additions & 2 deletions bindings/python/src/model/mixin/core/corner.cpp
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Expand Up @@ -29,8 +29,8 @@

#define PYTHON_CORNER( dimension ) \
const auto name##dimension = "Corner" + std::to_string( dimension ) + "D"; \
pybind11::class_< Corner##dimension##D, Component##dimension##D >( \
module, name##dimension.c_str() ) \
pybind11::class_< Corner##dimension##D, Component##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "mesh", &Corner##dimension##D::mesh, \
pybind11::return_value_policy::reference ) \
.def( "component_id", &Corner##dimension##D::component_id ) \
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4 changes: 2 additions & 2 deletions bindings/python/src/model/mixin/core/corner_collection.cpp
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Expand Up @@ -28,8 +28,8 @@
#define PYTHON_CORNER_COLLECTION( dimension ) \
const auto name##dimension = \
"CornerCollection" + std::to_string( dimension ) + "D"; \
pybind11::class_< CornerCollection##dimension##D, \
Component##dimension##D >( module, name##dimension.c_str() ) \
pybind11::class_< CornerCollection##dimension##D, Component##dimension##D, \
pybind11::smart_holder >( module, name##dimension.c_str() ) \
.def( "component_id", &CornerCollection##dimension##D::component_id ) \
.def_static( "component_type_static", \
&CornerCollection##dimension##D::component_type_static )
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