NanoPyx 2.0.0 release

What's Changed

• Fix dtype mismatch in resolution analyses by @alxndrkalinin in #148
• Adding Python 3.13 and numpy>2 support by @brunomsaraiva in #149
  ** fixes provided by @alxndrkalinin were implemented across some remaining functions that needed it to enable full python 3.13 and numpy>2 support.

New Contributors

• @alxndrkalinin made their first contribution in #148

Full Changelog: 1.3.3...2.0.0

1.3.3

What's Changed

• fixed a bug with NLM denoising OpenCL implementation

Full Changelog: 1.3.2...1.3.3

1.3.2

What's changed

• Added pad_edges option to use edge padding instead of leaving margins as 0 in SRRF/eSRRF
• Minor bug fixes and improvements

Pad edges option

• defaults to False, so eSRRF will default to provide borders with 0 values for pixels that there is not enough data to confidently calculate the radial gradient convergence.
• if True, eSRRF will perform edge value padding to calculate RGC values (although at a higher risk of artifacts) instead of setting the eSRRF image borders to 0.

Full Changelog: 1.3.1...1.3.2

1.3.1

What's Changed

• changing gha runner for ubuntu nightly action by @brunomsaraiva in #141
• Reverting esrrf implementation to be the same as NanoJ. by @brunomsaraiva in #142
• Fixes for CI manylinux issues by @brunomsaraiva in #143
• Implement FHT interpolations for eSRRF and Error Map by @brunomsaraiva in #145

Full Changelog: 1.2.3...1.3.1

1.2.3

What's Changed

• Update README.md by @brunomsaraiva in #122
• merge for v1.2.0 by @brunomsaraiva in #121
• added fix for numpy in colab notebooks by @brunomsaraiva in #123
• removing 3.12 from nightly by @brunomsaraiva in #124
• forcing output as np.ndarray by @brunomsaraiva in #125
• Changes to eSRRF 3D by @brunomsaraiva in #126
• updating actions by @brunomsaraiva in #127
• Updates to gha by @brunomsaraiva in #128
• build wheels gha update by @brunomsaraiva in #129
• further fixes to gha by @brunomsaraiva in #130
• fix to gha manylinux wheel building and testing by @brunomsaraiva in #131
• Fixes for issue #132 by @brunomsaraiva in #133
• gha update by @brunomsaraiva in #134
• removing apt-get command by @brunomsaraiva in #135
• installation of opencl-headers in cibuildwheel by @brunomsaraiva in #136
• Updates by @brunomsaraiva in #137
• unlocking cibuildwheel version by @brunomsaraiva in #138
• adding opencl deps installation in cibuildwheel directly by @brunomsaraiva in #139
• changing centos repos by @brunomsaraiva in #140

Full Changelog: 1.1.0...1.2.3

v1.1.0

What's Changed

• 2D convolution takes 2D+t arrays
• updating eSRRF by @brunomsaraiva in #120
• misc bugfixes

Full Changelog: 1.0.0...1.1.0

1.0.0

New release to go along with the publication: https://www.nature.com/articles/s41592-024-02562-6

Full Changelog: 0.6.1...1.0.0

0.6.1

Major changes:

• Changed image decorrelation analysis to mimic the matlab version instead of the ImageJ version (bugged) of this method: https://www.nature.com/articles/s41592-019-0515-7

Minor changes:

• removed deprecated testing notebooks

Full Changelog: 0.6.0...0.6.1

0.6.0

Adding full support to Python 3.12 versions.

Full Changelog: 0.5.0...0.6.0

0.5.0

Full Changelog: 0.4.0...0.5.0

What's Changed

• Make code snippet copy&pastable by @haesleinhuepf in #107

• Add link to napari plugin by @haesleinhuepf in #108

• eSRRF3D merge by @brunomsaraiva in #111

  • alpha version of 3D implementation

• Merge of Refactor 13may2024 by @brunomsaraiva in #113

  • NanoPyx now uses the new standalone liquid_engine python package: https://github.com/HenriquesLab/LiquidEngine

New Contributors

• @haesleinhuepf made their first contribution in #107

Full Changelog: 0.4.0...0.5.0