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- `align_muscle`: compute an MSA from a list of UniProt IDs using MUSCLE; write the MSA to a FASTA file. - `align_family`: downloads sequences, aligns with MUSCLE, downloads AlphaFold structures, aligns them to a membrane-normal reference frame using conserved MSA columns as structural anchors. - `query_tm_count`: queries EBI Proteins for the number of annotated TRANSMEM segments per accession code; useful for choosing a well-annotated `id_for_tms`. - `AlignFamilyParams`: conserved-column filter parameters. - when querying EBI Proteins, avoid throwing an error if an ID is not found (return `nothing` instead)
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align_muscle: compute an MSA from a list of UniProt IDs using MUSCLE; write the MSA to a FASTA file.align_family: downloads sequences, aligns with MUSCLE, downloads AlphaFold structures, aligns them to a membrane-normal reference frame using conserved MSA columns as structural anchors.query_tm_count: queries EBI Proteins for the number of annotated TRANSMEM segments per accession code; useful for choosing a well-annotatedid_for_tms.AlignFamilyParams: conserved-column filter parameters.nothinginstead)