docs(readme): make CLI-first, demote MCP to legacy#412
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- Lead with the `jrag` CLI; mark the MCP server as a legacy surface (intro, Tools section order, three-layer architecture, skills row) - Replace "GraphRAG" with "AST Graph" and reuse the term consistently - Note that the index/DB (LadybugDB + LanceDB) is local: no server to host, no cloud round-trip, source stays on disk Co-Authored-By: Claude <noreply@anthropic.com>
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jragCLI; mark the MCP server as a legacy surface (intro, Tools section order, three-layer architecture, skills row)