Add LEARN data transfer pipeline tools

.github/workflows/bandit.yml

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+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+# Bandit is a security linter designed to find common security issues in Python code.
+# This action will run Bandit on your codebase.
+# The results of the scan will be found under the Security tab of your repository.
+
+# https://github.com/marketplace/actions/bandit-scan is ISC licensed, by abirismyname
+# https://pypi.org/project/bandit/ is Apache v2.0 licensed, by PyCQA
+
+name: Bandit
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: [ "master" ]
+  schedule:
+    - cron: '33 20 * * 3'
+
+jobs:
+  bandit:
+    permissions:
+      contents: read # for actions/checkout to fetch code
+      security-events: write # for github/codeql-action/upload-sarif to upload SARIF results
+      actions: read # only required for a private repository by github/codeql-action/upload-sarif to get the Action run status
+
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Bandit Scan
+        uses: shundor/python-bandit-scan@ab1d87dfccc5a0ffab88be3aaac6ffe35c10d6cd
+        with: # optional arguments
+          # exit with 0, even with results found
+          exit_zero: true # optional, default is DEFAULT
+          # Github token of the repository (automatically created by Github)
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Needed to get PR information.
+          # File or directory to run bandit on
+          # path: # optional, default is .
+          # Report only issues of a given severity level or higher. Can be LOW, MEDIUM or HIGH. Default is UNDEFINED (everything)
+          # level: # optional, default is UNDEFINED
+          # Report only issues of a given confidence level or higher. Can be LOW, MEDIUM or HIGH. Default is UNDEFINED (everything)
+          # confidence: # optional, default is UNDEFINED
+          # comma-separated list of paths (glob patterns supported) to exclude from scan (note that these are in addition to the excluded paths provided in the config file) (default: .svn,CVS,.bzr,.hg,.git,__pycache__,.tox,.eggs,*.egg)
+          # excluded_paths: # optional, default is DEFAULT
+          # comma-separated list of test IDs to skip
+          # skips: # optional, default is DEFAULT
+          # path to a .bandit file that supplies command line arguments
+          # ini_path: # optional, default is DEFAULT
+

.github/workflows/ci.yml

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+name: CI
+
+on:
+  push:
+    branches: [master]
+  pull_request:
+    branches: [master]
+
+jobs:
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install ruff
+        run: pip install "ruff>=0.4"
+
+      - name: Ruff check
+        run: ruff check learn_upload/ tests/ scripts/
+
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install dependencies
+        run: pip install -r requirements-dev.txt
+
+      - name: Run tests
+        run: python -m pytest tests/ -v

.github/workflows/release.yml

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+name: Release
+
+on:
+  push:
+    tags: ["v*"]
+
+jobs:
+  build:
+    runs-on: windows-latest
+    permissions:
+      contents: write
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install dependencies
+        run: pip install pydicom PyQt6 numpy pyinstaller
+
+      - name: Build exe
+        run: pyinstaller learn_upload.spec
+
+      - name: Upload artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: learn_upload
+          path: dist/learn_upload.exe
+
+      - name: Create GitHub Release
+        uses: softprops/action-gh-release@v2
+        with:
+          files: dist/learn_upload.exe
+          generate_release_notes: true

.gitignore

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+# Patient Data Protection - CRITICAL: Never commit patient data
+patient-confidential/
+**/patient-confidential/
+*patient*confidential*
+*confidential*
+
+# Patient data files that might appear elsewhere
+*patient*.csv
+*Patient*.csv
+*PATIENT*.csv
+patient_*.csv
+Patient_*.csv
+
+# Python artifacts
+__pycache__/
+*.py[cod]
+*$py.class
+*.so
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# Virtual environments
+venv/
+env/
+ENV/
+.venv/
+.env/
+
+# IDE and editor files
+.vscode/
+.idea/
+.vs/
+*.swp
+*.swo
+*~
+.DS_Store
+Thumbs.db
+
+# Temporary files
+*.tmp
+*.temp
+*.log
+*.bak
+*.backup
+*.docx
+
+# Medical imaging data files (potential patient data)
+*.dcm
+*.DCM
+*.his
+*.HIS
+
+# Large data directories
+data/
+Data/
+DATA/
+XVI_COLLECTION/
+*XVI*COLLECTION*
+Docs/Prostate/
+
+# Output files that might contain patient data
+output/
+Output/
+results/
+Results/
+exports/
+Exports/
+
+# Jupyter notebook checkpoints
+.ipynb_checkpoints/
+
+# System files
+.DS_Store
+Thumbs.db
+desktop.ini
+
+# Claude Code configuration
+CLAUDE.md
+.claude/