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To process a list of files listing all files with theabsolute path.#146

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monodera wants to merge 1 commit intoKeck-DataReductionPipelines:devfrom
monodera:only_one_file
Open

To process a list of files listing all files with theabsolute path.#146
monodera wants to merge 1 commit intoKeck-DataReductionPipelines:devfrom
monodera:only_one_file

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@monodera monodera commented Dec 4, 2020

When the files of, e.g., Flat.txt and FlatThermal.txt, are listed as the absolute paths, the current list_file_to_strings in IO.py ignores the first file. The pull request take care such cases.

I tried with the following files:

Flat_multi.txt

# Created by 'monodera' on Mon Nov 30 14:13:06 2020
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0036.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits

FlatThermal_multi.txt

# Created by 'monodera' on Mon Nov 30 14:13:06 2020
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0049.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0050.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0051.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0052.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0053.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0054.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0055.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0056.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0057.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0058.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0059.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0060.fits
/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0061.fits

Driver.py

import matplotlib

matplotlib.use("TkAgg")  # Force TkAgg backend for interactivity. This is
# critical to bypass a bug in the MacOSX backend.
import os
import time
import logging

logger = logging.getLogger(__name__)

import MOSFIRE
from MOSFIRE import (
    Background,
    Combine,
    Detector,
    Flats,
    IO,
    Options,
    Rectify,
    Wavelength,
    Extract,
)
from MOSFIRE.MosfireDrpLog import info, debug, warning, error

import numpy as np

np.seterr(all="ignore")

flatops = Options.flat
waveops = Options.wavelength

# Driver file automatically generated on Sun Nov 29 19:43:30 2020

# If you have questions, please submit a ticket on the github issue page:
# https://github.com/Keck-DataReductionPipelines/MosfireDRP/issues
# Alternatively, email the developers at mosfiredrp@gmail.com

maskname = "SXDS2_19838"
band = "K"

Flats.handle_flats("Flat.txt", maskname, band, flatops, lampOffList="FlatThermal.txt")

With the current release, the log file looks like the following.

2020-12-03 23:45:26,782 - MosfireDrpLog.            <module> - INFO: 3.6.3 | packaged by conda-forge | (default, Dec  9 2017, 16:20:51) 
[GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)]
2020-12-03 23:45:26,782 - MosfireDrpLog.            <module> - INFO: python version = 3.6.3
2020-12-03 23:45:26,782 - MosfireDrpLog.            <module> - INFO: numpy version = 1.13.3
2020-12-03 23:45:26,782 - MosfireDrpLog.            <module> - INFO: matplotlib version = 3.1.0
2020-12-03 23:45:26,782 - MosfireDrpLog.            <module> - INFO: astropy version = 2.0.3
2020-12-03 23:45:26,782 - MosfireDrpLog.            <module> - INFO: ccdproc version = 1.3.0.post1
2020-12-03 23:45:26,893 -           IO.list_file_to_strings - DEBUG: Loading: Flat_multi.txt
2020-12-03 23:45:26,894 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits
2020-12-03 23:45:26,894 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits
2020-12-03 23:45:26,894 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits
2020-12-03 23:45:26,894 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits
2020-12-03 23:45:26,894 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits
2020-12-03 23:45:26,894 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits
2020-12-03 23:45:26,894 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits
2020-12-03 23:45:26,894 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits
2020-12-03 23:45:26,895 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits
2020-12-03 23:45:26,895 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits
2020-12-03 23:45:26,895 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits
2020-12-03 23:45:26,895 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits
2020-12-03 23:45:26,917 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:26,917 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:26,998 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:26,998 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,077 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,078 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,168 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,168 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,247 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,248 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,328 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,328 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,409 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,409 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,493 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,493 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,575 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,575 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,654 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,654 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,734 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,734 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,814 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:27,814 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:27,875 -        Flats.        handle_flats - INFO: Attempting to combine files in ['/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits']
2020-12-03 23:45:27,875 -           IO.           imcombine - INFO: Combining files using ccdproc.combine task
2020-12-03 23:45:27,875 -           IO.           imcombine - INFO:   reject=clip_extrema
2020-12-03 23:45:27,875 -           IO.           imcombine - INFO:   nlow=1
2020-12-03 23:45:27,875 -           IO.           imcombine - INFO:   nhigh=1
2020-12-03 23:45:27,875 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits
2020-12-03 23:45:27,875 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits
2020-12-03 23:45:27,876 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits
2020-12-03 23:45:33,140 -           IO.           imcombine - INFO:   Done.
2020-12-03 23:45:33,140 -        Flats.        handle_flats - INFO: *********** Attempting to combine Lamps off files in FlatThermal_multi.txt
2020-12-03 23:45:33,140 -           IO.list_file_to_strings - DEBUG: Loading: FlatThermal_multi.txt
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0050.fits
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0051.fits
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0052.fits
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0053.fits
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0054.fits
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0055.fits
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0056.fits
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0057.fits
2020-12-03 23:45:33,141 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0058.fits
2020-12-03 23:45:33,142 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0059.fits
2020-12-03 23:45:33,142 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0060.fits
2020-12-03 23:45:33,142 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0061.fits
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO: Combining files using ccdproc.combine task
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   reject=clip_extrema
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   nlow=1
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   nhigh=1
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0050.fits
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0051.fits
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0052.fits
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0053.fits
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0054.fits
2020-12-03 23:45:33,142 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0055.fits
2020-12-03 23:45:33,143 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0056.fits
2020-12-03 23:45:33,143 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0057.fits
2020-12-03 23:45:33,143 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0058.fits
2020-12-03 23:45:33,143 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0059.fits
2020-12-03 23:45:33,143 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0060.fits
2020-12-03 23:45:33,143 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0061.fits
2020-12-03 23:45:37,760 -           IO.           imcombine - INFO:   Done.
2020-12-03 23:45:37,760 -           IO.             imarith - INFO: combflat_2d_K.fits - combflat_lamps_off_2d_K.fits -> combflat_lamps_on_2d_K.fits
2020-12-03 23:45:37,964 -        Flats.        handle_flats - DEBUG: Combined '['/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits']' to 'SXDS2_19838'
2020-12-03 23:45:37,964 -        Flats.        handle_flats - DEBUG: Using on-off flat for K band
2020-12-03 23:45:37,991 -           IO.            readfits - DEBUG: combflat_lamps_on_2d_K.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:45:37,991 -           IO.            readfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:45:37,997 -        Flats.        handle_flats - INFO: Flat written to combflat_lamps_on_2d_K.fits
2020-12-03 23:45:37,997 -        Flats.        handle_flats - INFO: Finding slit edges in combflat_lamps_on_2d_K.fits
2020-12-03 23:45:38,029 -        Flats.  find_and_fit_edges - INFO: [00] Finding Slit Edges for SXDS2_19997 ending at 1857. Slit composed of 4 CSU slits
2020-12-03 23:45:38,029 -        Flats.  find_and_fit_edges - INFO: [00] Threshold used is 8886.7
2020-12-03 23:45:38,290 -        Flats.  find_and_fit_edges - INFO: [01] Finding Slit Edges for SXDS2_19229 ending at 1680. Slit composed of 4 CSU slits
2020-12-03 23:45:38,290 -        Flats.  find_and_fit_edges - INFO: [01] Threshold used is 9709.7
2020-12-03 23:45:38,539 -        Flats.  find_and_fit_edges - INFO: [02] Finding Slit Edges for SXDS2_19981 ending at 1547. Slit composed of 3 CSU slits
2020-12-03 23:45:38,540 -        Flats.  find_and_fit_edges - INFO: [02] Threshold used is 9459.7
2020-12-03 23:45:38,763 -        Flats.  find_and_fit_edges - INFO: [03] Finding Slit Edges for SXDS2_18545 ending at 1458. Slit composed of 2 CSU slits
2020-12-03 23:45:38,763 -        Flats.  find_and_fit_edges - INFO: [03] Threshold used is 8619.3
2020-12-03 23:45:39,005 -        Flats.  find_and_fit_edges - INFO: [04] Finding Slit Edges for SXDS2_17233 ending at 1370. Slit composed of 2 CSU slits
2020-12-03 23:45:39,005 -        Flats.  find_and_fit_edges - INFO: [04] Threshold used is 8204.8
2020-12-03 23:45:39,247 -        Flats.  find_and_fit_edges - INFO: [05] Finding Slit Edges for SXDS2_19333 ending at 1193. Slit composed of 4 CSU slits
2020-12-03 23:45:39,247 -        Flats.  find_and_fit_edges - INFO: [05] Threshold used is 8924.4
2020-12-03 23:45:39,501 -        Flats.  find_and_fit_edges - INFO: [06] Finding Slit Edges for SXDS2_18880 ending at 1104. Slit composed of 2 CSU slits
2020-12-03 23:45:39,501 -        Flats.  find_and_fit_edges - INFO: [06] Threshold used is 8810.3
2020-12-03 23:45:39,716 -        Flats.  find_and_fit_edges - INFO: [07] Finding Slit Edges for SXDS2_16609 ending at  972. Slit composed of 3 CSU slits
2020-12-03 23:45:39,716 -        Flats.  find_and_fit_edges - INFO: [07] Threshold used is 7685.4
2020-12-03 23:45:39,951 -        Flats.  find_and_fit_edges - INFO: [08] Finding Slit Edges for SXDS2_19221 ending at  883. Slit composed of 2 CSU slits
2020-12-03 23:45:39,951 -        Flats.  find_and_fit_edges - INFO: [08] Threshold used is 8700.9
2020-12-03 23:45:40,187 -        Flats.  find_and_fit_edges - INFO: [09] Finding Slit Edges for SXDS2_18406 ending at  795. Slit composed of 2 CSU slits
2020-12-03 23:45:40,187 -        Flats.  find_and_fit_edges - INFO: [09] Threshold used is 8940.8
2020-12-03 23:45:40,429 -        Flats.  find_and_fit_edges - INFO: [10] Finding Slit Edges for SXDS2_17265 ending at  750. Slit composed of 1 CSU slits
2020-12-03 23:45:40,429 -        Flats.  find_and_fit_edges - INFO: [10] Threshold used is 8381.3
2020-12-03 23:45:40,695 -        Flats.  find_and_fit_edges - INFO: [11] Finding Slit Edges for SXDS2_19838 ending at  662. Slit composed of 2 CSU slits
2020-12-03 23:45:40,695 -        Flats.  find_and_fit_edges - INFO: [11] Threshold used is 8571.5
2020-12-03 23:45:40,833 -        Flats.      find_edge_pair - INFO: Skipping wavelength pixel): 341
2020-12-03 23:45:41,270 -        Flats.  find_and_fit_edges - INFO: [12] Finding Slit Edges for SXDS2_19791 ending at  573. Slit composed of 2 CSU slits
2020-12-03 23:45:41,270 -        Flats.  find_and_fit_edges - INFO: [12] Threshold used is 8477.5
2020-12-03 23:45:41,438 -        Flats.  find_and_fit_edges - INFO: [13] Finding Slit Edges for SXDS2_15659 ending at  485. Slit composed of 2 CSU slits
2020-12-03 23:45:41,438 -        Flats.  find_and_fit_edges - INFO: [13] Threshold used is 7030.0
2020-12-03 23:45:41,699 -        Flats.  find_and_fit_edges - INFO: [14] Finding Slit Edges for SXDS2_17094 ending at  396. Slit composed of 2 CSU slits
2020-12-03 23:45:41,699 -        Flats.  find_and_fit_edges - INFO: [14] Threshold used is 8216.5
2020-12-03 23:45:41,961 -        Flats.  find_and_fit_edges - INFO: [15] Finding Slit Edges for SXDS2_18415 ending at  352. Slit composed of 1 CSU slits
2020-12-03 23:45:41,961 -        Flats.  find_and_fit_edges - INFO: [15] Threshold used is 9117.7
2020-12-03 23:45:42,186 -        Flats.  find_and_fit_edges - INFO: [16] Finding Slit Edges for SXDS2_19510 ending at  264. Slit composed of 2 CSU slits
2020-12-03 23:45:42,186 -        Flats.  find_and_fit_edges - INFO: [16] Threshold used is 8324.0
2020-12-03 23:45:42,449 -        Flats.  find_and_fit_edges - INFO: [17] Finding Slit Edges for CALIB_SXDS2_19063 ending at  175. Slit composed of 2 CSU slits
2020-12-03 23:45:42,449 -        Flats.  find_and_fit_edges - INFO: [17] Threshold used is 8265.5
2020-12-03 23:45:42,630 -        Flats.  find_and_fit_edges - INFO: [18] Finding Slit Edges for SXDS2_15791 ending at   87. Slit composed of 2 CSU slits
2020-12-03 23:45:42,631 -        Flats.  find_and_fit_edges - INFO: [18] Threshold used is 7684.2
2020-12-03 23:45:42,890 -        Flats.  find_and_fit_edges - INFO: [19] Finding Slit Edges for SXDS2_16653 ending at    1. Slit composed of 2 CSU slits
2020-12-03 23:45:42,890 -        Flats.  find_and_fit_edges - INFO: [19] Threshold used is 8507.0
2020-12-03 23:45:43,074 -        Flats.     make_pixel_flat - INFO: SXDS2_19997] Bounding top/bottom: 1862/2034
2020-12-03 23:45:43,086 -        Flats.     make_pixel_flat - INFO: SXDS2_19229] Bounding top/bottom: 1685/1851
2020-12-03 23:45:43,098 -        Flats.     make_pixel_flat - INFO: SXDS2_19981] Bounding top/bottom: 1553/1675
2020-12-03 23:45:43,107 -        Flats.     make_pixel_flat - INFO: SXDS2_18545] Bounding top/bottom: 1464/1541
2020-12-03 23:45:43,113 -        Flats.     make_pixel_flat - INFO: SXDS2_17233] Bounding top/bottom: 1375/1453
2020-12-03 23:45:43,118 -        Flats.     make_pixel_flat - INFO: SXDS2_19333] Bounding top/bottom: 1199/1365
2020-12-03 23:45:43,129 -        Flats.     make_pixel_flat - INFO: SXDS2_18880] Bounding top/bottom: 1111/1188
2020-12-03 23:45:43,135 -        Flats.     make_pixel_flat - INFO: SXDS2_16609] Bounding top/bottom: 976/1100
2020-12-03 23:45:43,143 -        Flats.     make_pixel_flat - INFO: SXDS2_19221] Bounding top/bottom: 891/968
2020-12-03 23:45:43,152 -        Flats.     make_pixel_flat - INFO: SXDS2_18406] Bounding top/bottom: 801/880
2020-12-03 23:45:43,161 -        Flats.     make_pixel_flat - INFO: SXDS2_17265] Bounding top/bottom: 757/791
2020-12-03 23:45:43,165 -        Flats.     make_pixel_flat - INFO: SXDS2_19838] Bounding top/bottom: 672/749
2020-12-03 23:45:43,171 -        Flats.     make_pixel_flat - INFO: SXDS2_19791] Bounding top/bottom: 582/662
2020-12-03 23:45:43,176 -        Flats.     make_pixel_flat - INFO: SXDS2_15659] Bounding top/bottom: 489/570
2020-12-03 23:45:43,183 -        Flats.     make_pixel_flat - INFO: SXDS2_17094] Bounding top/bottom: 404/482
2020-12-03 23:45:43,189 -        Flats.     make_pixel_flat - INFO: SXDS2_18415] Bounding top/bottom: 360/394
2020-12-03 23:45:43,193 -        Flats.     make_pixel_flat - INFO: SXDS2_19510] Bounding top/bottom: 272/350
2020-12-03 23:45:43,198 -        Flats.     make_pixel_flat - INFO: CALIB_SXDS2_19063] Bounding top/bottom: 184/260
2020-12-03 23:45:43,202 -        Flats.     make_pixel_flat - INFO: SXDS2_15791] Bounding top/bottom: 92/171
2020-12-03 23:45:43,208 -        Flats.     make_pixel_flat - INFO: SXDS2_16653] Bounding top/bottom: 5/83
2020-12-03 23:45:43,214 -        Flats.     make_pixel_flat - INFO: Producing Pixel Flat...
2020-12-03 23:45:44,511 -        Flats.     make_pixel_flat - INFO: Done.
2020-12-03 23:45:44,517 -        Flats.        handle_flats - INFO: Pixel flat took  17.62 s

You can see the first file is not loaded.

WIth the modification, the log looks like the following.

2020-12-03 23:50:30,044 - MosfireDrpLog.            <module> - INFO: 3.6.3 | packaged by conda-forge | (default, Dec  9 2017, 16:20:51) 
[GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)]
2020-12-03 23:50:30,045 - MosfireDrpLog.            <module> - INFO: python version = 3.6.3
2020-12-03 23:50:30,045 - MosfireDrpLog.            <module> - INFO: numpy version = 1.13.3
2020-12-03 23:50:30,045 - MosfireDrpLog.            <module> - INFO: matplotlib version = 3.1.0
2020-12-03 23:50:30,045 - MosfireDrpLog.            <module> - INFO: astropy version = 2.0.3
2020-12-03 23:50:30,045 - MosfireDrpLog.            <module> - INFO: ccdproc version = 1.3.0.post1
2020-12-03 23:50:30,174 -           IO.list_file_to_strings - DEBUG: Loading: Flat_multi.txt
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0036.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits
2020-12-03 23:50:30,175 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits
2020-12-03 23:50:30,197 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0036.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,197 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,275 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,275 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,354 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,354 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,432 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,432 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,508 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,508 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,587 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,587 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,669 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,669 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,750 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,750 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,826 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,826 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,900 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,900 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:30,979 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:30,979 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:31,059 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:31,059 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:31,142 -           IO.         readmosfits - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:31,142 -           IO.         readmosfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:31,203 -        Flats.        handle_flats - INFO: Attempting to combine files in ['/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0036.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits']
2020-12-03 23:50:31,203 -           IO.           imcombine - INFO: Combining files using ccdproc.combine task
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   reject=clip_extrema
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   nlow=1
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   nhigh=1
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0036.fits
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits
2020-12-03 23:50:31,204 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits
2020-12-03 23:50:31,205 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits
2020-12-03 23:50:31,205 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits
2020-12-03 23:50:31,205 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits
2020-12-03 23:50:31,205 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits
2020-12-03 23:50:36,774 -           IO.           imcombine - INFO:   Done.
2020-12-03 23:50:36,774 -        Flats.        handle_flats - INFO: *********** Attempting to combine Lamps off files in FlatThermal_multi.txt
2020-12-03 23:50:36,774 -           IO.list_file_to_strings - DEBUG: Loading: FlatThermal_multi.txt
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0049.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0050.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0051.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0052.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0053.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0054.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0055.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0056.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0057.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0058.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0059.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0060.fits
2020-12-03 23:50:36,775 -        Flats.        handle_flats - DEBUG: /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0061.fits
2020-12-03 23:50:36,775 -           IO.           imcombine - INFO: Combining files using ccdproc.combine task
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   reject=clip_extrema
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   nlow=1
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   nhigh=1
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0049.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0050.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0051.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0052.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0053.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0054.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0055.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0056.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0057.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0058.fits
2020-12-03 23:50:36,776 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0059.fits
2020-12-03 23:50:36,777 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0060.fits
2020-12-03 23:50:36,777 -           IO.           imcombine - INFO:   /Users/monodera/work/s20b-031/raw/2020nov30/m201130_0061.fits
2020-12-03 23:50:41,605 -           IO.           imcombine - INFO:   Done.
2020-12-03 23:50:41,606 -           IO.             imarith - INFO: combflat_2d_K.fits - combflat_lamps_off_2d_K.fits -> combflat_lamps_on_2d_K.fits
2020-12-03 23:50:41,795 -        Flats.        handle_flats - DEBUG: Combined '['/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0036.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0037.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0038.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0039.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0040.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0041.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0042.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0043.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0044.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0045.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0046.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0047.fits', '/Users/monodera/work/s20b-031/raw/2020nov30/m201130_0048.fits']' to 'SXDS2_19838'
2020-12-03 23:50:41,795 -        Flats.        handle_flats - DEBUG: Using on-off flat for K band
2020-12-03 23:50:41,822 -           IO.            readfits - DEBUG: combflat_lamps_on_2d_K.fits contains a DATASEC keyword not compatible with the pipeline
2020-12-03 23:50:41,822 -           IO.            readfits - DEBUG: The content of the keyword will be erased on the reduced data
2020-12-03 23:50:41,828 -        Flats.        handle_flats - INFO: Flat written to combflat_lamps_on_2d_K.fits
2020-12-03 23:50:41,828 -        Flats.        handle_flats - INFO: Finding slit edges in combflat_lamps_on_2d_K.fits
2020-12-03 23:50:41,861 -        Flats.  find_and_fit_edges - INFO: [00] Finding Slit Edges for SXDS2_19997 ending at 1857. Slit composed of 4 CSU slits
2020-12-03 23:50:41,861 -        Flats.  find_and_fit_edges - INFO: [00] Threshold used is 8862.7
2020-12-03 23:50:42,092 -        Flats.  find_and_fit_edges - INFO: [01] Finding Slit Edges for SXDS2_19229 ending at 1680. Slit composed of 4 CSU slits
2020-12-03 23:50:42,092 -        Flats.  find_and_fit_edges - INFO: [01] Threshold used is 9684.8
2020-12-03 23:50:42,320 -        Flats.  find_and_fit_edges - INFO: [02] Finding Slit Edges for SXDS2_19981 ending at 1547. Slit composed of 3 CSU slits
2020-12-03 23:50:42,320 -        Flats.  find_and_fit_edges - INFO: [02] Threshold used is 9436.5
2020-12-03 23:50:42,518 -        Flats.  find_and_fit_edges - INFO: [03] Finding Slit Edges for SXDS2_18545 ending at 1458. Slit composed of 2 CSU slits
2020-12-03 23:50:42,519 -        Flats.  find_and_fit_edges - INFO: [03] Threshold used is 8597.2
2020-12-03 23:50:42,745 -        Flats.  find_and_fit_edges - INFO: [04] Finding Slit Edges for SXDS2_17233 ending at 1370. Slit composed of 2 CSU slits
2020-12-03 23:50:42,745 -        Flats.  find_and_fit_edges - INFO: [04] Threshold used is 8184.2
2020-12-03 23:50:42,958 -        Flats.  find_and_fit_edges - INFO: [05] Finding Slit Edges for SXDS2_19333 ending at 1193. Slit composed of 4 CSU slits
2020-12-03 23:50:42,958 -        Flats.  find_and_fit_edges - INFO: [05] Threshold used is 8901.5
2020-12-03 23:50:43,253 -        Flats.  find_and_fit_edges - INFO: [06] Finding Slit Edges for SXDS2_18880 ending at 1104. Slit composed of 2 CSU slits
2020-12-03 23:50:43,253 -        Flats.  find_and_fit_edges - INFO: [06] Threshold used is 8789.0
2020-12-03 23:50:43,464 -        Flats.  find_and_fit_edges - INFO: [07] Finding Slit Edges for SXDS2_16609 ending at  972. Slit composed of 3 CSU slits
2020-12-03 23:50:43,464 -        Flats.  find_and_fit_edges - INFO: [07] Threshold used is 7666.4
2020-12-03 23:50:43,714 -        Flats.  find_and_fit_edges - INFO: [08] Finding Slit Edges for SXDS2_19221 ending at  883. Slit composed of 2 CSU slits
2020-12-03 23:50:43,715 -        Flats.  find_and_fit_edges - INFO: [08] Threshold used is 8680.4
2020-12-03 23:50:43,948 -        Flats.  find_and_fit_edges - INFO: [09] Finding Slit Edges for SXDS2_18406 ending at  795. Slit composed of 2 CSU slits
2020-12-03 23:50:43,949 -        Flats.  find_and_fit_edges - INFO: [09] Threshold used is 8919.2
2020-12-03 23:50:44,191 -        Flats.  find_and_fit_edges - INFO: [10] Finding Slit Edges for SXDS2_17265 ending at  750. Slit composed of 1 CSU slits
2020-12-03 23:50:44,191 -        Flats.  find_and_fit_edges - INFO: [10] Threshold used is 8361.7
2020-12-03 23:50:44,480 -        Flats.  find_and_fit_edges - INFO: [11] Finding Slit Edges for SXDS2_19838 ending at  662. Slit composed of 2 CSU slits
2020-12-03 23:50:44,480 -        Flats.  find_and_fit_edges - INFO: [11] Threshold used is 8552.5
2020-12-03 23:50:44,620 -        Flats.      find_edge_pair - INFO: Skipping wavelength pixel): 341
2020-12-03 23:50:45,095 -        Flats.  find_and_fit_edges - INFO: [12] Finding Slit Edges for SXDS2_19791 ending at  573. Slit composed of 2 CSU slits
2020-12-03 23:50:45,095 -        Flats.  find_and_fit_edges - INFO: [12] Threshold used is 8458.5
2020-12-03 23:50:45,274 -        Flats.  find_and_fit_edges - INFO: [13] Finding Slit Edges for SXDS2_15659 ending at  485. Slit composed of 2 CSU slits
2020-12-03 23:50:45,275 -        Flats.  find_and_fit_edges - INFO: [13] Threshold used is 7013.9
2020-12-03 23:50:45,534 -        Flats.  find_and_fit_edges - INFO: [14] Finding Slit Edges for SXDS2_17094 ending at  396. Slit composed of 2 CSU slits
2020-12-03 23:50:45,534 -        Flats.  find_and_fit_edges - INFO: [14] Threshold used is 8198.0
2020-12-03 23:50:45,807 -        Flats.  find_and_fit_edges - INFO: [15] Finding Slit Edges for SXDS2_18415 ending at  352. Slit composed of 1 CSU slits
2020-12-03 23:50:45,807 -        Flats.  find_and_fit_edges - INFO: [15] Threshold used is 9098.2
2020-12-03 23:50:46,021 -        Flats.  find_and_fit_edges - INFO: [16] Finding Slit Edges for SXDS2_19510 ending at  264. Slit composed of 2 CSU slits
2020-12-03 23:50:46,021 -        Flats.  find_and_fit_edges - INFO: [16] Threshold used is 8306.3
2020-12-03 23:50:46,275 -        Flats.  find_and_fit_edges - INFO: [17] Finding Slit Edges for CALIB_SXDS2_19063 ending at  175. Slit composed of 2 CSU slits
2020-12-03 23:50:46,275 -        Flats.  find_and_fit_edges - INFO: [17] Threshold used is 8247.5
2020-12-03 23:50:46,450 -        Flats.  find_and_fit_edges - INFO: [18] Finding Slit Edges for SXDS2_15791 ending at   87. Slit composed of 2 CSU slits
2020-12-03 23:50:46,450 -        Flats.  find_and_fit_edges - INFO: [18] Threshold used is 7666.7
2020-12-03 23:50:46,693 -        Flats.  find_and_fit_edges - INFO: [19] Finding Slit Edges for SXDS2_16653 ending at    1. Slit composed of 2 CSU slits
2020-12-03 23:50:46,694 -        Flats.  find_and_fit_edges - INFO: [19] Threshold used is 8488.6
2020-12-03 23:50:46,866 -        Flats.     make_pixel_flat - INFO: SXDS2_19997] Bounding top/bottom: 1862/2034
2020-12-03 23:50:46,878 -        Flats.     make_pixel_flat - INFO: SXDS2_19229] Bounding top/bottom: 1685/1851
2020-12-03 23:50:46,890 -        Flats.     make_pixel_flat - INFO: SXDS2_19981] Bounding top/bottom: 1553/1675
2020-12-03 23:50:46,898 -        Flats.     make_pixel_flat - INFO: SXDS2_18545] Bounding top/bottom: 1464/1541
2020-12-03 23:50:46,904 -        Flats.     make_pixel_flat - INFO: SXDS2_17233] Bounding top/bottom: 1375/1453
2020-12-03 23:50:46,910 -        Flats.     make_pixel_flat - INFO: SXDS2_19333] Bounding top/bottom: 1199/1365
2020-12-03 23:50:46,921 -        Flats.     make_pixel_flat - INFO: SXDS2_18880] Bounding top/bottom: 1111/1188
2020-12-03 23:50:46,928 -        Flats.     make_pixel_flat - INFO: SXDS2_16609] Bounding top/bottom: 976/1100
2020-12-03 23:50:46,936 -        Flats.     make_pixel_flat - INFO: SXDS2_19221] Bounding top/bottom: 891/968
2020-12-03 23:50:46,942 -        Flats.     make_pixel_flat - INFO: SXDS2_18406] Bounding top/bottom: 801/880
2020-12-03 23:50:46,948 -        Flats.     make_pixel_flat - INFO: SXDS2_17265] Bounding top/bottom: 757/791
2020-12-03 23:50:46,951 -        Flats.     make_pixel_flat - INFO: SXDS2_19838] Bounding top/bottom: 672/749
2020-12-03 23:50:46,957 -        Flats.     make_pixel_flat - INFO: SXDS2_19791] Bounding top/bottom: 582/662
2020-12-03 23:50:46,963 -        Flats.     make_pixel_flat - INFO: SXDS2_15659] Bounding top/bottom: 489/570
2020-12-03 23:50:46,968 -        Flats.     make_pixel_flat - INFO: SXDS2_17094] Bounding top/bottom: 404/482
2020-12-03 23:50:46,973 -        Flats.     make_pixel_flat - INFO: SXDS2_18415] Bounding top/bottom: 360/394
2020-12-03 23:50:46,977 -        Flats.     make_pixel_flat - INFO: SXDS2_19510] Bounding top/bottom: 272/350
2020-12-03 23:50:46,982 -        Flats.     make_pixel_flat - INFO: CALIB_SXDS2_19063] Bounding top/bottom: 184/260
2020-12-03 23:50:46,986 -        Flats.     make_pixel_flat - INFO: SXDS2_15791] Bounding top/bottom: 92/171
2020-12-03 23:50:46,992 -        Flats.     make_pixel_flat - INFO: SXDS2_16653] Bounding top/bottom: 5/83
2020-12-03 23:50:46,997 -        Flats.     make_pixel_flat - INFO: Producing Pixel Flat...
2020-12-03 23:50:48,271 -        Flats.     make_pixel_flat - INFO: Done.
2020-12-03 23:50:48,276 -        Flats.        handle_flats - INFO: Pixel flat took   18.1 s

Here the first file in the lists are correctly read.

(sorry that my editor automatically did some formatting....)

@joshwalawender joshwalawender changed the base branch from master to dev December 7, 2020 21:16
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joshwalawender commented Dec 7, 2020

Thanks @monodera ! I've pointed the PR to the dev branch and we'll do some testing here.

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@monodera @joshwalawender