docs: sync structure-inference SLURM options + point to release 2.4.0#618
Merged
Conversation
Mirror the expanded "SLURM defaults for structure inference" section from AlphaPulldownSnakemake: add slurm_exclude_nodes and structure_inference_max_runtime to the config example, and document GPU node exclusion / runtime cap and the unified-memory options (structure_inference_unified_memory + structure_inference_xla_mem_fraction, now defaulting to "auto" = host RAM / GPU VRAM). Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Update the snakedeploy --tag and the alphapulldown.yaml env URL from 2.1.8 to the new 2.4.0 release. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Brings the README in line with the latest AlphaPulldownSnakemake (release 2.4.0).
Two commits:
SLURM defaults for structure inferencesection with AlphaPulldownSnakemake — addslurm_exclude_nodesandstructure_inference_max_runtimeto the config example, and document GPU node exclusion / runtime cap and unified memory (structure_inference_unified_memory+structure_inference_xla_mem_fraction, which now defaults toauto= allocated host RAM / physical GPU VRAM, computed per job).snakedeploy --tagand thealphapulldown.yamlenv URL2.1.8→2.4.0.README-only.
🤖 Generated with Claude Code