CircuitSEQ website prototype

A work-in-progress prototype of the CircuitSEQ website.

Try it out online

It is now running on a heiCLOUD VM here: https://circuitseq.iwr.uni-heidelberg.de/

You can sign up for a user account using any valid heidelberg/embl/dkfz email address.

Implemented features

• Users can
  • sign up with a valid email address
  • request a sample, optionally providing a reference sequence
  • see a list of their requested samples
  • download their reference sequences
  • download their results
• Admins can
  • see a list of all users
  • see a list of all requested samples
  • change the site settings
    • set which day of the week sample submission closes
    • set number of plate rows/cols
    • add/remove running options
  • download a zipped tsv of this weeks requests including reference sequences as fasta files
  • upload a zipfile with analysis results for a sample
  • also do all of the above using a REST API (see api_examples.ipynb)

Notes

• currently all uploaded samples may be deleted without warning as the prototype is updated!

Developer info

If you want to make changes to the code, see README_DEV.md for instructions on how to locally build and deploy the website.