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MLforHealth
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MIMIC_Extract
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Allow psql port etc and update for current Pandas
- #62
#62
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juliangilbey
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Allow psql port etc and update for current Pandas
#62
juliangilbey
wants to merge 11 commits into
MLforHealth:master
MLforHealth/MIMIC_Extract:master
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juliangilbey:allow-psql-port
juliangilbey/MIMIC_Extract:allow-psql-port
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Commits on Nov 27, 2021
Allow PostgreSQL port setting and slightly simplify Makefile in the process
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Modify postgres_make_extended_concepts.sh to allow more flexible #sql connection strings
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Commits on Nov 28, 2021
Allow make build_curated_from_psql to use the local socket by default
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Use consistent quoting
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Commits on Nov 29, 2021
Fix username/password variable name issues
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f7166d2
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Add public to search_path, as that is where mimic-code stores the concepts
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Handle deprecation and removal of .ix() method from pandas
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Replace rename_axis() method by correct rename() method
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Further pandas updates
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Commits on Dec 26, 2021
Allow local settings to override setup_user_env.sh
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Commits on Jan 2, 2022
Fix local settings facility: only perform actions once local settings read
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