Add flexible label locations and ROI management#1
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TorecLuik wants to merge 2 commits intoNFDI4BIOIMAGE:mainfrom
Open
Add flexible label locations and ROI management#1TorecLuik wants to merge 2 commits intoNFDI4BIOIMAGE:mainfrom
TorecLuik wants to merge 2 commits intoNFDI4BIOIMAGE:mainfrom
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Add flexible label image locations and ROI management features 🤖✨
This PR enhances the Labels2Rois script to support more flexible workflows for comparing different segmentation methods on the same images.
Key Features Added: 🚀
Custom label suffixes: Configurable suffix parameter (default:
-label) allows for varied naming conventions like_cellpose,_stardist,.0, etc.Cross-dataset label search: New "Specific Dataset" mode enables storing label images in a separate dataset from target images via
Label_Dataset_IDparameterNamed ROIs with method identification: ROIs are now named with suffix prefix (e.g.,
cellpose_1,stardist_2) making it easy to distinguish between different segmentation methodsSelective ROI clearing: Optional ROI management with filtering - clear all existing ROIs or only those matching specific text (e.g., remove only "cellpose" ROIs while preserving manual annotations)
Use Cases: 🔬
Backward Compatibility: 🔄
All existing workflows continue to work unchanged. New features are opt-in via additional script parameters.
Files Changed: 📝
Labels2Rois.py: Core functionality enhancementsREADME.md: Documentation updates with examples and parameter reference*🤖 Enhanced