🏥 Clinical Notes Model for medaCy 🏥
This repository contains a versioned, medaCy compatible Model for information extraction from clinical notes.
This is the light-weight version (no metamap) of medaCy's model for extracting 9 unique entities from clinical notes:
Drug, Strength, Duration, Route, Form, ADE, Dosage, Reason, Frequency
Model generalization ability is evaluated over 202 patient clinical note files not seen during training. Strict indicates exact matches of spans, Lenient indicates a fuzzy matching of spans (model predictions are off by single characters).
| Entities | Strict | Lenient |
|---|---|---|
| Drug | ||
| Strength | ||
| Duration | ||
| Route | ||
| Form | ||
| ADE | ||
| Dosage | ||
| Reason | ||
| Frequency | ||
| System |
N2C2 2018 Shared Task The data used to induce this model is protected by HIPAA privacy regulations and thus cannot be published.
Andriy Mulyar and Bridget McInnes
