Add get cropped image

[cfs-data]

No description provided.

[github-actions]

Diff Coverage

Diff: origin/main..HEAD, staged and unstaged changes

• packages/scratch-core/src/conversion/get_cropped_image.py (94.1%): Missing lines 35
• packages/scratch-core/src/conversion/mask.py (100%)
• packages/scratch-core/src/conversion/resample.py (100%)

Summary

• Total: 41 lines
• Missing: 1 line
• Coverage: 97%

packages/scratch-core/src/conversion/get_cropped_image.py

Lines 31-39

  31     :returns: A numpy array with the cropped image data.
  32     """
  33     # Check whether the mask only consists of background
  34     if not np.any(mask):
! 35         return np.full_like(scan_image.data, np.nan)
  36 
  37     # Resample image and mask to speed up the processing
  38     resampled_scan_image, resampled_mask = resample_scan_image_and_mask(
  39         scan_image, mask, factors=resampling_factors

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[github-actions]

Package	Line Rate	Branch Rate	Health
.	100%	100%	✔
comparators	100%	100%	✔
conversion	99%	94%	✔
conversion.leveling	100%	100%	✔
conversion.leveling.solver	100%	75%	✔
image_generation	95%	75%	✔
parsers	91%	50%	✔
parsers.patches	91%	62%	✔
preprocessors	100%	100%	✔
processors	100%	100%	✔
utils	80%	100%	✔
Summary	97% (576 / 595)	84% (54 / 64)	✔

Minimum allowed line rate is 50%