Skip to content

Added codefreeze content #1

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
montsam wants to merge 4 commits into
base: main
Choose a base branch
from
Open

Added codefreeze content #1

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
f296066
Create README.md
montsam May 27, 2022
6006a3e
Update README.md
montsam May 27, 2022
7e63ef5
Project Archive Dump
montsam Jun 7, 2022
f66735b
Last Item
montsam Jun 7, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CodeFreeze2022/Project Archive/Colab Notebooks/DensityExplFRate.ipynb
View file
Open in desktop

Large diffs are not rendered by default.

1 change: 1 addition & 0 deletions CodeFreeze2022/Project Archive/Colab Notebooks/GrowthRate.ipynb
View file
Open in desktop

Large diffs are not rendered by default.

Binary file added CodeFreeze2022/Project Archive/Documentation/Final Demo Slide Deck.pdf
View file
Open in desktop
Binary file not shown.
37 changes: 37 additions & 0 deletions CodeFreeze2022/Project Archive/Documentation/Growth Rate Datasets/BalanusGrowthRate.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,37 @@
Balanus Growth Rate
5213.033333
-3200.714286
294.0952381
-189.2413793
-35.57142857
42.21052632
64.64285714
-482.4705882
-211.3571429
-389.0357143
-351.75
1073.933333
-467.2222222
-1.5
-0.818181818
16.36666667
-68.62222222
-343.2666667
-277.9285714
-228.1515152
-31.27586207
-38.46428571
26.96428571
328.9347826
-177.0625
-64.79310345
86.33333333
-102.2068966
128.0555556
-117.7666667
-9.214285714
106
303.25
991.7857143
1404.428571
-169.46
35 changes: 35 additions & 0 deletions ...eze2022/Project Archive/Documentation/Growth Rate Datasets/BalanusGrowthRate_Outliers.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
Balanus Growth Rate
294.0952381
-189.2413793
-35.57142857
42.21052632
64.64285714
-482.4705882
-211.3571429
-389.0357143
-351.75
1073.933333
-467.2222222
-1.5
-0.818181818
16.36666667
-68.62222222
-343.2666667
-277.9285714
-228.1515152
-31.27586207
-38.46428571
26.96428571
328.9347826
-177.0625
-64.79310345
86.33333333
-102.2068966
128.0555556
-117.7666667
-9.214285714
106
303.25
991.7857143
1404.428571
-169.46
35 changes: 35 additions & 0 deletions CodeFreeze2022/Project Archive/Documentation/Growth Rate Datasets/BalanusLOG.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
Balanus Growth Rate
0.003990986
-0.002555827
-0.000502181
0.000590083
0.000877771
-0.007308871
-0.003833303
-0.008353358
-0.009719425
0.023488539
-0.008900381
-3.52E-05
-1.92E-05
0.000381908
-0.00165204
-0.009918414
-0.010844986
-0.012742012
-0.002242707
-0.002969977
0.002107608
0.016625059
-0.006979861
-0.002987656
0.003941112
-0.005115036
0.007000516
-0.007514751
-0.000750743
0.007724546
0.015657859
0.027518018
0.020204724
-0.001954319
11,665 changes: 11,665 additions & 0 deletions CodeFreeze2022/Project Archive/Documentation/Growth Rate Datasets/ExpPatch_IntxnStr.csv
View file
Open in desktop

Large diffs are not rendered by default.

19 changes: 19 additions & 0 deletions ...eze2022/Project Archive/Documentation/Growth Rate Datasets/ExpPatch_PatchTidalHeights.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
"Patch","HeightMLLW"
"A",523
"B",496
"C",523
"D",569
"E",553
"F",603
"G",492
"AB",481
"AC",550
"AD",562
"AE",512
"AF",529
"AG",204
"BB",587
"BC",574
"BD",491
"BE",561
"BF",577
64,062 changes: 64,062 additions & 0 deletions CodeFreeze2022/Project Archive/Documentation/Growth Rate Datasets/ExpPatch_PhotoCounts.csv
View file
Open in desktop

Large diffs are not rendered by default.

1 change: 1 addition & 0 deletions CodeFreeze2022/Project Archive/Documentation/Growth Rate Datasets/ExpPatch_QuadLocations.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
Date,Site,Location,Patch,Quad,Top Left X,Top Left Y,Bottom Right X,Bottom Right Y08.19.13,YB,Natural Bridge,A,1,74,147,40,11608.19.13,YB,Natural Bridge,A,2,140,123,107,8808.19.13,YB,Natural Bridge,A,3,95,114,63,8108.19.13,YB,Natural Bridge,A,4,50,107,12,8108.19.13,YB,Natural Bridge,A,5,140,82,107,5308.19.13,YB,Natural Bridge,A,6,97,79,64,4908.19.13,YB,Natural Bridge,A,7,48,72,15,4408.19.13,YB,Natural Bridge,A,8,88,40,53,1208.19.13,YB,Natural Bridge,A,9,45,39,10,1108.19.13,YB,Natural Bridge,B,1,44,145,7,11808.19.13,YB,Natural Bridge,B,2,87,121,52,9408.19.13,YB,Natural Bridge,B,3,46,115,12,8808.19.13,YB,Natural Bridge,B,4,117,86,78,6308.19.13,YB,Natural Bridge,B,5,109,60,72,2908.19.13,YB,Natural Bridge,B,6,67,58,33,3108.19.13,YB,Natural Bridge,B,7,147,25,106,708.19.13,YB,Natural Bridge,B,8,78,30,43,208.19.13,YB,Natural Bridge,B,9,41,28,5,308.19.13,YB,Natural Bridge,C,1,142,142,107,11608.19.13,YB,Natural Bridge,C,2,102,143,61,11908.19.13,YB,Natural Bridge,C,3,46,144,12,11608.19.13,YB,Natural Bridge,C,4,135,107,100,7908.19.13,YB,Natural Bridge,C,5,82,105,42,8608.19.13,YB,Natural Bridge,C,6,143,67,104,4508.19.13,YB,Natural Bridge,C,7,63,75,23,5608.19.13,YB,Natural Bridge,C,8,141,34,103,1208.19.13,YB,Natural Bridge,C,9,85,47,47,2308.19.13,YB,Natural Bridge,D,1,129,146,91,12208.19.13,YB,Natural Bridge,D,2,68,144,34,11708.19.13,YB,Natural Bridge,D,3,145,103,111,7408.19.13,YB,Natural Bridge,D,4,96,101,60,7508.19.13,YB,Natural Bridge,D,5,40,102,2,7808.19.13,YB,Natural Bridge,D,6,146,60,114,2908.19.13,YB,Natural Bridge,D,7,94,65,59,3708.19.13,YB,Natural Bridge,D,8,47,57,8,3408.19.13,YB,Natural Bridge,D,9,96,28,59,308.19.13,YB,Natural Bridge,E,1,140,147,103,12108.19.13,YB,Natural Bridge,E,2,93,146,57,11808.19.13,YB,Natural Bridge,E,3,46,145,7,12208.19.13,YB,Natural Bridge,E,4,117,103,78,8008.19.13,YB,Natural Bridge,E,5,53,112,15,8608.19.13,YB,Natural Bridge,E,6,119,72,83,4608.19.13,YB,Natural Bridge,E,7,56,78,17,5508.19.13,YB,Natural Bridge,E,8,105,36,68,1008.19.13,YB,Natural Bridge,E,9,45,36,10,708.19.13,YB,Natural Bridge,F,1,143,147,106,12008.19.13,YB,Natural Bridge,F,2,86,137,46,11608.19.13,YB,Natural Bridge,F,3,40,143,2,12008.19.13,YB,Natural Bridge,F,4,143,103,108,7508.19.13,YB,Natural Bridge,F,5,82,107,47,8108.19.13,YB,Natural Bridge,F,6,101,67,68,3808.19.13,YB,Natural Bridge,F,7,49,65,16,3508.19.13,YB,Natural Bridge,F,8,132,38,97,1008.19.13,YB,Natural Bridge,F,9,64,32,29,608.19.13,YB,Natural Bridge,G,1,145,137,108,10908.19.13,YB,Natural Bridge,G,2,80,135,50,10808.19.13,YB,Natural Bridge,G,3,143,100,106,7408.19.13,YB,Natural Bridge,G,4,83,102,46,7608.19.13,YB,Natural Bridge,G,5,137,69,97,4408.19.13,YB,Natural Bridge,G,6,92,73,56,4508.19.13,YB,Natural Bridge,G,7,44,71,7,4508.19.13,YB,Natural Bridge,G,8,137,35,97,1008.19.13,YB,Natural Bridge,G,9,90,37,53,1208.19.13,YB,Natural Bridge,AB,1,122,137,84,11608.19.13,YB,Natural Bridge,AB,2,67,142,33,11708.19.13,YB,Natural Bridge,AB,3,142,105,103,8208.19.13,YB,Natural Bridge,AB,4,93,104,55,7908.19.13,YB,Natural Bridge,AB,5,49,105,12,8108.19.13,YB,Natural Bridge,AB,6,144,62,105,3908.19.13,YB,Natural Bridge,AB,7,94,73,57,4608.19.13,YB,Natural Bridge,AB,8,121,34,84,908.19.13,YB,Natural Bridge,AB,9,47,33,8,608.19.13,YB,Natural Bridge,AC,1,147,146,109,12408.19.13,YB,Natural Bridge,AC,2,87,147,50,12208.19.13,YB,Natural Bridge,AC,3,37,143,1,11908.19.13,YB,Natural Bridge,AC,4,91,108,53,8708.19.13,YB,Natural Bridge,AC,5,41,104,1,8408.19.13,YB,Natural Bridge,AC,6,143,56,103,3608.19.13,YB,Natural Bridge,AC,7,87,76,46,5908.19.13,YB,Natural Bridge,AC,8,140,28,101,608.19.13,YB,Natural Bridge,AC,9,52,33,13,1108.19.13,YB,Natural Bridge,AF,1,138,149,103,12308.19.13,YB,Natural Bridge,AF,2,84,144,95,11808.19.13,YB,Natural Bridge,AF,3,38,144,1,12708.19.13,YB,Natural Bridge,AF,4,141,79,103,5408.19.13,YB,Natural Bridge,AF,5,80,106,42,8108.19.13,YB,Natural Bridge,AF,6,59,73,20,4908.19.13,YB,Natural Bridge,AF,7,138,36,100,1008.19.13,YB,Natural Bridge,AF,8,93,41,54,1808.19.13,YB,Natural Bridge,AF,9,49,39,12,1508.19.13,YB,Natural Bridge,AG,1,148,144,110,11908.19.13,YB,Natural Bridge,AG,2,101,146,62,12408.19.13,YB,Natural Bridge,AG,3,55,146,16,12508.19.13,YB,Natural Bridge,AG,4,136,99,96,7808.19.13,YB,Natural Bridge,AG,5,86,108,46,8908.19.13,YB,Natural Bridge,AG,6,45,114,5,9408.19.13,YB,Natural Bridge,AG,7,132,36,92,1708.19.13,YB,Natural Bridge,AG,8,81,31,38,1308.19.13,YB,Natural Bridge,AG,9,43,54,1,3808.20.13,YB,Natural Bridge,AD,1,76,145,42,11608.20.13,YB,Natural Bridge,AD,2,135,107,100,8008.20.13,YB,Natural Bridge,AD,3,94,105,57,7608.20.13,YB,Natural Bridge,AD,4,48,103,12,7808.20.13,YB,Natural Bridge,AD,5,137,72,105,4108.20.13,YB,Natural Bridge,AD,6,97,70,63,4108.20.13,YB,Natural Bridge,AD,7,52,72,16,4408.20.13,YB,Natural Bridge,AD,8,100,34,65,808.20.13,YB,Natural Bridge,AD,9,50,38,12,1408.20.13,YB,Natural Bridge,AE,1,144,147,107,12208.20.13,YB,Natural Bridge,AE,2,96,135,62,10408.20.13,YB,Natural Bridge,AE,3,43,147,15,11008.20.13,YB,Natural Bridge,AE,4,141,113,105,8608.20.13,YB,Natural Bridge,AE,5,97,101,60,7308.20.13,YB,Natural Bridge,AE,6,52,80,20,5008.20.13,YB,Natural Bridge,AE,7,133,77,107,4408.20.13,YB,Natural Bridge,AE,8,90,30,55,308.20.13,YB,Natural Bridge,AE,9,44,32,10,308.20.13,YB,Natural Bridge,BB,1,147,149,110,12508.20.13,YB,Natural Bridge,BB,2,97,148,63,11908.20.13,YB,Natural Bridge,BB,3,55,150,16,12408.20.13,YB,Natural Bridge,BB,4,146,114,109,9008.20.13,YB,Natural Bridge,BB,5,47,96,10,7008.20.13,YB,Natural Bridge,BB,6,130,68,92,4508.20.13,YB,Natural Bridge,BB,7,75,63,39,3508.20.13,YB,Natural Bridge,BB,8,147,24,109,1008.20.13,YB,Natural Bridge,BB,9,99,32,60,908.20.13,YB,Natural Bridge,BC,1,145,145,108,11708.20.13,YB,Natural Bridge,BC,2,93,137,54,11608.20.13,YB,Natural Bridge,BC,3,42,147,4,12208.20.13,YB,Natural Bridge,BC,4,111,111,76,8008.20.13,YB,Natural Bridge,BC,5,47,99,8,7408.20.13,YB,Natural Bridge,BC,6,130,64,93,3508.20.13,YB,Natural Bridge,BC,7,80,70,43,4408.20.13,YB,Natural Bridge,BC,8,128,35,96,408.20.13,YB,Natural Bridge,BC,9,54,34,17,908.20.13,YB,Natural Bridge,BD,1,146,144,108,11908.20.13,YB,Natural Bridge,BD,2,96,144,62,11808.20.13,YB,Natural Bridge,BD,3,42,147,3,12108.20.13,YB,Natural Bridge,BD,4,143,100,105,7308.20.13,YB,Natural Bridge,BD,5,93,97,51,7508.20.13,YB,Natural Bridge,BD,6,47,103,6,8008.20.13,YB,Natural Bridge,BD,7,144,72,110,4208.20.13,YB,Natural Bridge,BD,8,101,63,61,3908.20.13,YB,Natural Bridge,BD,9,50,37,10,1508.20.13,YB,Natural Bridge,BE,1,147,145,106,12608.20.13,YB,Natural Bridge,BE,2,77,145,37,12608.20.13,YB,Natural Bridge,BE,3,145,113,103,9408.20.13,YB,Natural Bridge,BE,4,41,115,2,9308.20.13,YB,Natural Bridge,BE,5,141,84,103,6008.20.13,YB,Natural Bridge,BE,6,95,89,56,6708.20.13,YB,Natural Bridge,BE,7,137,39,98,1608.20.13,YB,Natural Bridge,BE,8,54,63,15,4208.20.13,YB,Natural Bridge,BE,9,47,31,7,1208.20.13,YB,Natural Bridge,BF,1,142,147,105,12008.20.13,YB,Natural Bridge,BF,2,79,133,42,10808.20.13,YB,Natural Bridge,BF,3,119,112,88,7808.20.13,YB,Natural Bridge,BF,4,62,101,24,7708.20.13,YB,Natural Bridge,BF,5,111,73,76,4608.20.13,YB,Natural Bridge,BF,6,54,67,11,4508.20.13,YB,Natural Bridge,BF,7,149,27,108,808.20.13,YB,Natural Bridge,BF,8,101,29,59,1208.20.13,YB,Natural Bridge,BF,9,36,38,1,11
Expand Down
29 changes: 29 additions & 0 deletions ...reeze2022/Project Archive/Documentation/Growth Rate Datasets/ExpPatch_SpeciesTypesIDs.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,29 @@
Do not edit this file unless you know what you’re doing. It is sourced for analyses.
Type,Species,Abb,Notes
Type 1,Balanus_glandula,Bg
Type 2,Balanus_glandula_(dead),BgD
Type 3,Chthamalus_dalli,Cth
Type 4,Chthamalus_dalli (dead),CthD
Type 5,Semibalanus_cariosus,Sc
Type 6,Semibalanus_cariosus_(dead),ScD
Type 7,Mytilus_spp,Myt,if both are present but too small to distinguish species
Type 8,Mytilus_spp_(dead),MytD,if both are present but too small to distinguish species
Type 9,Nucella_ostrina,No
Type 10,Nucella_canaliculata,Nc
Type 11,Pollicipes_polymerus,Pp
Type 12,Limpets,Lim,may start splitting later
Type 13,Littorina_sitkana,Ls
Type 14,Anemones,Ae
Type 15,Mytilus_trossulus,Mt
Type 16,Mytilus_trossulus_(dead),MtD
Type 17,Mytilus_californianus,Mc
Type 18,Mytilus_californianus_(dead),McD
Type 19,Algae,Alg,any species
Type 20,Leptasterias,Lep,6 arms
Type 21,Pisaster,Pis,5 arms
Type 22,Chiton_spp,Chi
Type 23,Emplectonema worm,Emp,
Type 24,Nereis_worm,Ner
Type 25,Other_worm spp.,Wor
Type 26,Nucella_eggs,Negg
Type 27,Sandtube_worm
Loading