Add Toxcast with an assay description 90k datapoint for 158 assay#346
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phalem wants to merge 1 commit intoOpenBioML:mainfrom
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Add Toxcast with an assay description 90k datapoint for 158 assay#346phalem wants to merge 1 commit intoOpenBioML:mainfrom
phalem wants to merge 1 commit intoOpenBioML:mainfrom
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ToxCast from 'https://tdcommons.ai/single_pred_tasks/tox/#toxcast' ToxCast from Richard, Ann M., et al. ["https://doi.org/10.1021/acs.chemrestox.6b00135"] ToxCast 'assay_name', 'assay_desc', 'organism', 'tissue', 'cell_format' extracted from Assay_Information_June_2022.zip from "https://doi.org/10.23645/epacomptox.6062623.v10" Both ToxCast data are aligned using assay_name columns.
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ToxCast from 'https://tdcommons.ai/single_pred_tasks/tox/#toxcast'
ToxCast from Richard, Ann M., et al. ["https://doi.org/10.1021/acs.chemrestox.6b00135"]
ToxCast 'assay_name', 'assay_desc', 'organism', 'tissue', 'cell_format' extracted from Assay_Information_June_2022.zip from "https://doi.org/10.23645/epacomptox.6062623.v10" Both ToxCast data are aligned using assay_name columns.
@MicPie Can you please add bib :
"""@misc{https://doi.org/10.23645/epacomptox.6062623.v8,
doi = {10.23645/EPACOMPTOX.6062623.V8},
url = {https://epa.figshare.com/articles/dataset/ToxCast_Database_invitroDB_/6062623/8},
author = {Toxicology, EPA's National Center for Computational},
keywords = {Toxicology (incl. clinical toxicology)},
title = {ToxCast Database (invitroDB)},
publisher = {The United States Environmental Protection Agency’s Center for Computational Toxicology and Exposure},
year = {2022},
copyright = {Creative Commons Zero v1.0 Universal}"""
as when I run transform.py it give
\and\n, I comment it, I wish you can add it without these noise.Data was upload to hugging face as I didn't find direct access to description and I extract it from the epacomptox.6062623.v10
I hope this can be useful