Centralize SIMD with Highway and vendor all dependencies as submodules#39

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KimBioInfoStudio wants to merge 14 commits intoOpenGene:mainfrom

KimBioInfoStudio:main

Commits on Feb 26, 2026

feat: add Highway SIMD library as git submodule (v1.3)

KimBioInfoStudio
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claude
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build: switch Highway from system library to vendored third_party submodule

KimBioInfoStudio
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claude
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feat: add centralized SIMD module with Highway multi-target dispatch

KimBioInfoStudio
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claude
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perf: centralize SIMD with Highway multi-target dispatch

KimBioInfoStudio
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claude
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docs: fix overflow comment in CountQualityMetricsImpl

KimBioInfoStudio
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claude
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test: add ONT dummy data generator for e2e benchmarking

KimBioInfoStudio
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claude
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build: vendor isa-l and libdeflate as submodules with dual-mode Makefile

KimBioInfoStudio
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claude
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docs: update build instructions for submodule-based compilation

KimBioInfoStudio
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claude
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build: simplify to static-only build from submodules

KimBioInfoStudio
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claude
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build: add googletest as submodule, remove system gtest dependency

KimBioInfoStudio
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claude
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build: enable isa-l NEON assembly on ARM macOS

KimBioInfoStudio
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claude
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ci: update workflow for submodule-based static build

KimBioInfoStudio
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claude
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ci: upgrade to macos-15 for Xcode 17+ ARM assembly support

KimBioInfoStudio
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claude
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Commits on Feb 28, 2026

perf: use TableLookupBytes for reverseComplement SIMD

KimBioInfoStudio
and
claude
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