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rechunk-jobarray

Trying out Coiled's SLURM-style job arrays.

Here we are trying out a rechunking workflow where we rechunk a large dataset in pieces using job array, generating a collection of rechunked zarr datasets.

We submit the job to Coiled using the script submit_coiled_batch.sh, which simply does:

coiled batch run ./ERA5-rechunker-AWS-s3.py

while all the details of the machine type specified, amount of disk, software environment, etc is stored in the submitted Python script as SLURM-like params.

Note that the S3 credentials to write to the Open Storage Network object storage are passed to Coiled as secret environment variables.

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