feat: Add zarr v3 format support with zarr-python v3 library#125
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sameeul merged 5 commits intoPolusAI:masterfrom Feb 13, 2026
Merged
feat: Add zarr v3 format support with zarr-python v3 library#125sameeul merged 5 commits intoPolusAI:masterfrom
sameeul merged 5 commits intoPolusAI:masterfrom
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Migrate from zarr-python v2 to v3 library (zarr>=3) and add support for reading/writing both zarr v2 and v3 on-disk formats. Adds backend="zarr3" option with Zarr3Reader/Zarr3Writer classes, detect_zarr_format() utility for auto-detection, and filesystem-based _list_zarr_children() fallback for v2 store enumeration under the new library. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
zarr-python v3's Group.__getitem__ requires string keys, not integers. This fixes TypeError when using level parameter with BioReader. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Migrate from zarr-python v2 to v3 library (zarr>=3) and add support for reading/writing both zarr v2 and v3 on-disk formats. Adds backend="zarr3" option with Zarr3Reader/Zarr3Writer classes, detect_zarr_format() utility for auto-detection, and filesystem-based _list_zarr_children() fallback for v2 store enumeration under the new library.