Added readme to describe the examples#3
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FrancoisGaits wants to merge 1 commit intoSTORM-IRIT:mainfrom
Open
Added readme to describe the examples#3FrancoisGaits wants to merge 1 commit intoSTORM-IRIT:mainfrom
FrancoisGaits wants to merge 1 commit intoSTORM-IRIT:mainfrom
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nmellado
reviewed
Jun 20, 2023
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| This folder contains examples on how to use the program to generate scatterers. | |||
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| Three use-case are presented : | |||
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| Three use-case are presented : | |
| Three use-cases are presented: | |
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| - Visualisation of the scatterers in the probe coordinate system using DICOM | ||
| - Visualisation of the scatterers in the global coordinate system using a cube and a tilted probe | ||
| - Generation of scatterers to be used in off-line simulation using a sphere |
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| - Visualisation of the scatterers in the probe coordinate system using DICOM | |
| - Visualisation of the scatterers in the global coordinate system using a cube and a tilted probe | |
| - Generation of scatterers to be used in off-line simulation using a sphere | |
| - Visualisation of the scatterers in the global coordinate system using a cube and a tilted probe | |
| - Generation of scatterers to be used in off-line simulation using a sphere | |
| - Visualisation of the scatterers in the probe coordinate system using DICOM | |
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| **DICOM visualisation** | ||
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| *File:* | ||
| settings_preview_projectedDICOM.json | ||
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| ***/!\\*** - This configuration file needs to be filled with actual DICOM slice files. | ||
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| Additionally, only DICOM in the form of one slice by file are accepted, they will be read as stacked bottom up in the given order. | ||
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| *Out:* a *preview_projectedDICOM.dat* to be used with the scatterer_visualisation.py script. | ||
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| This file contains scatterers generated and extracted to simulate the DICOM region described, projected in the probe system coordinate. | ||
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| --- | ||
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| **Tilted Cube in probe coordinate** | ||
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| *File:* | ||
| settings_preview_tiltedCube.json | ||
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| *Out:* | ||
| a *tiltedCubeScats_preview.dat* to be used with the scatterer_visualisation.py script. | ||
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| This file contains scatterers generated for a tiled probe crossing a cube. the visualisation is done in global coordinate system, with the grid displayed. | ||
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| --- | ||
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| **Simulation with a Sphere** | ||
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| *File:* settings_simu_sphere.json | ||
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| *Out:* | ||
| a sphereScats.dat to be used with FieldII/Simus to simulate an ultrasound image using the generated scatterers. This file represents an imaging plane crossing a sphere in its center. No newline at end of file |
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| **DICOM visualisation** | |
| *File:* | |
| settings_preview_projectedDICOM.json | |
| ***/!\\*** - This configuration file needs to be filled with actual DICOM slice files. | |
| Additionally, only DICOM in the form of one slice by file are accepted, they will be read as stacked bottom up in the given order. | |
| *Out:* a *preview_projectedDICOM.dat* to be used with the scatterer_visualisation.py script. | |
| This file contains scatterers generated and extracted to simulate the DICOM region described, projected in the probe system coordinate. | |
| --- | |
| **Tilted Cube in probe coordinate** | |
| *File:* | |
| settings_preview_tiltedCube.json | |
| *Out:* | |
| a *tiltedCubeScats_preview.dat* to be used with the scatterer_visualisation.py script. | |
| This file contains scatterers generated for a tiled probe crossing a cube. the visualisation is done in global coordinate system, with the grid displayed. | |
| --- | |
| **Simulation with a Sphere** | |
| *File:* settings_simu_sphere.json | |
| *Out:* | |
| a sphereScats.dat to be used with FieldII/Simus to simulate an ultrasound image using the generated scatterers. This file represents an imaging plane crossing a sphere in its center. | |
| **Tilted Cube in probe coordinate** | |
| *File:* | |
| settings_preview_tiltedCube.json | |
| *Out:* | |
| a *tiltedCubeScats_preview.dat* to be used with the scatterer_visualisation.py script. | |
| This file contains scatterers generated for a tiled probe crossing a cube. the visualisation is done in global coordinate system, with the grid displayed. | |
| --- | |
| **Simulation with a Sphere** | |
| *File:* settings_simu_sphere.json | |
| *Out:* | |
| a sphereScats.dat to be used with FieldII/Simus to simulate an ultrasound image using the generated scatterers. This file represents an imaging plane crossing a sphere in its center. | |
| --- | |
| **DICOM visualisation** | |
| *File:* | |
| settings_preview_projectedDICOM.json | |
| ***/!\\*** - We do not provide DICOM files for this example: the configuration file needs to be edited to link to local DICOM files. The configuration file except a list of DICOMs, where each slice is stored in a different file. Files are read as stacked bottom up in the given order. | |
| *Out:* a *preview_projectedDICOM.dat* to be used with the scatterer_visualisation.py script. | |
| This file contains scatterers generated and extracted to simulate the DICOM region described, projected in the probe system coordinate. |
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