fix: stabilize storage, memory, LSP, and Hermes LCM

[ScriptedAlchemy]

Summary

• exclude held coordination locks from consolidation backups while preserving forensic .dirty markers
• reuse the active daemon database handle for project memory without redirecting branch-scoped access away from the shared project store
• stabilize fake LSP server startup on macOS
• preserve atomic Hermes LCM tool transactions and trust validated backend replay shrink estimates

Aggregated PRs

• fix(hermes): preserve atomic LCM tool transactions #464 exact head 584fc9ef0b594c241e76cb462fdccf974ca058ee (includes 7978e0bb, a5132540, 584fc9ef)
• fix(memory): reuse daemon database handle #466 exact corrected head 1ab53cf8
• test(lsp): stabilize fake server startup #467 exact head d3d08c3d

Each listed head is an ancestor of this branch head. #465 is the single aggregate runtime-fix PR targeting master.

Verification

• focused consolidation restart and forensic-backup tests
• project-store MCP regression tests
• LSP broker tests
• cargo test --test hermes_suite --test session_suite --quiet
• cargo fmt --all -- --check
• full aggregate CI required before merge

Hermes Agent core was not modified.

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