Add a pre-commit config

.clang-format

@@ -0,0 +1,134 @@
+# SPDX-FileCopyrightText: 2021 SeisSol Group
+#
+# SPDX-License-Identifier: BSD-3-Clause
+# SPDX-LicenseComments: Full text under /LICENSE and /LICENSES/
+#
+# SPDX-FileContributor: Author lists in /AUTHORS and /CITATION.cff
+
+Language:        Cpp
+AccessModifierOffset: -4
+AlignAfterOpenBracket: Align
+AlignConsecutiveMacros: false
+AlignConsecutiveAssignments: false
+AlignConsecutiveDeclarations: false
+AlignEscapedNewlines: Right
+AlignOperands:   true
+AlignTrailingComments: true
+AllowAllArgumentsOnNextLine: true
+AllowAllConstructorInitializersOnNextLine: true
+AllowAllParametersOfDeclarationOnNextLine: true
+AllowShortBlocksOnASingleLine: false
+AllowShortCaseLabelsOnASingleLine: false
+AllowShortFunctionsOnASingleLine: All
+AllowShortLambdasOnASingleLine: All
+AllowShortIfStatementsOnASingleLine: Never
+AllowShortLoopsOnASingleLine: false
+AlwaysBreakAfterDefinitionReturnType: None
+AlwaysBreakAfterReturnType: None
+AlwaysBreakBeforeMultilineStrings: false
+AlwaysBreakTemplateDeclarations: Yes
+BinPackArguments: false
+BinPackParameters: false
+BraceWrapping:
+  AfterCaseLabel:  false
+  AfterClass:      false
+  AfterControlStatement: false
+  AfterEnum:       false
+  AfterFunction:   false
+  AfterNamespace:  false
+  AfterObjCDeclaration: false
+  AfterStruct:     false
+  AfterUnion:      false
+  AfterExternBlock: false
+  BeforeCatch:     false
+  BeforeElse:      false
+  IndentBraces:    false
+  SplitEmptyFunction: true
+  SplitEmptyRecord: true
+  SplitEmptyNamespace: true
+BreakBeforeBinaryOperators: None
+BreakBeforeBraces: Attach
+BreakBeforeInheritanceComma: false
+BreakInheritanceList: BeforeColon
+BreakBeforeTernaryOperators: true
+BreakConstructorInitializersBeforeComma: false
+BreakConstructorInitializers: BeforeColon
+BreakAfterJavaFieldAnnotations: false
+BreakStringLiterals: true
+ColumnLimit:     100
+CommentPragmas:  '^ IWYU pragma:'
+CompactNamespaces: false
+ConstructorInitializerAllOnOneLineOrOnePerLine: false
+ConstructorInitializerIndentWidth: 4
+ContinuationIndentWidth: 4
+Cpp11BracedListStyle: true
+DerivePointerAlignment: false
+DisableFormat:   false
+ExperimentalAutoDetectBinPacking: false
+FixNamespaceComments: true
+ForEachMacros:
+  - foreach
+  - Q_FOREACH
+  - BOOST_FOREACH
+IncludeBlocks:   Regroup
+IncludeCategories:
+  # keep the doctest headers in front
+  - Regex:           '^(<|")doctest'
+    Priority:        1
+  - Regex:           '^"(llvm|llvm-c|clang|clang-c)/'
+    Priority:        3
+  - Regex:           '^(<|"(gtest|gmock|isl|json)/)'
+    Priority:        4
+  - Regex:           '.*'
+    Priority:        2
+IncludeIsMainRegex: '(Test)?$'
+IndentCaseLabels: false
+IndentPPDirectives: None
+IndentWidth:     2
+IndentWrappedFunctionNames: true
+JavaScriptQuotes: Leave
+JavaScriptWrapImports: true
+KeepEmptyLinesAtTheStartOfBlocks: true
+MacroBlockBegin: ''
+MacroBlockEnd:   ''
+MaxEmptyLinesToKeep: 1
+NamespaceIndentation: None
+ObjCBinPackProtocolList: Auto
+ObjCBlockIndentWidth: 2
+ObjCSpaceAfterProperty: false
+ObjCSpaceBeforeProtocolList: true
+PenaltyBreakAssignment: 2
+PenaltyBreakBeforeFirstCallParameter: 19
+PenaltyBreakComment: 300
+PenaltyBreakFirstLessLess: 120
+PenaltyBreakString: 1000
+PenaltyBreakTemplateDeclaration: 10
+PenaltyExcessCharacter: 1000000
+PenaltyReturnTypeOnItsOwnLine: 60
+PointerAlignment: Left
+QualifierAlignment: Left
+ReflowComments:  true
+SortIncludes:    true
+SortUsingDeclarations: true
+SpaceAfterCStyleCast: false
+SpaceAfterLogicalNot: false
+SpaceAfterTemplateKeyword: true
+SpaceBeforeAssignmentOperators: true
+SpaceBeforeCpp11BracedList: false
+SpaceBeforeCtorInitializerColon: true
+SpaceBeforeInheritanceColon: true
+SpaceBeforeParens: ControlStatements
+SpaceBeforeRangeBasedForLoopColon: true
+SpaceInEmptyParentheses: false
+SpacesBeforeTrailingComments: 1
+SpacesInAngles:  false
+SpacesInContainerLiterals: true
+SpacesInCStyleCastParentheses: false
+SpacesInParentheses: false
+SpacesInSquareBrackets: false
+Standard:        Cpp11
+StatementMacros:
+  - Q_UNUSED
+  - QT_REQUIRE_VERSION
+TabWidth:        8
+UseTab:          Never

.git-blame-ignore-revs

@@ -0,0 +1,11 @@
+# SPDX-FileCopyrightText: 2026 SeisSol Group
+#
+# SPDX-License-Identifier: BSD-3-Clause
+# SPDX-LicenseComments: Full text under /LICENSE and /LICENSES/
+#
+# SPDX-FileContributor: Author lists in /AUTHORS and /CITATION.cff
+
+# apply pre-commit (whitespaces etc.)
+412e0d94440dd4371f6d269f16ef6b50396e2907
+# apply clang-format
+c007c326b54aa0f43deea770ba17ad465eb3d107

.github/workflows/pre-commit.yml

@@ -0,0 +1,21 @@
+# SPDX-FileCopyrightText: 2025 SeisSol Group
+#
+# SPDX-License-Identifier: BSD-3-Clause
+# SPDX-LicenseComments: Full text under /LICENSE and /LICENSES/
+#
+# SPDX-FileContributor: Author lists in /AUTHORS and /CITATION.cff
+
+name: pre-commit
+on:
+  - push
+
+jobs:
+  pre-commit:
+    name: pre-commit
+    runs-on: ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+        with:
+          submodules: recursive
+
+      - uses: pre-commit/action@v3.0.1

.pre-commit-config.yaml

@@ -0,0 +1,92 @@
+# SPDX-FileCopyrightText: 2025 SeisSol Group
+#
+# SPDX-License-Identifier: BSD-3-Clause
+# SPDX-LicenseComments: Full text under /LICENSE and /LICENSES/
+#
+# SPDX-FileContributor: Author lists in /AUTHORS and /CITATION.cff
+
+---
+
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v6.0.0
+    hooks:
+    -   id: check-merge-conflict
+        name: '[GENERIC] merge conflict check'
+    -   id: check-symlinks
+        name: '[GENERIC] symlink check'
+    -   id: destroyed-symlinks
+        name: '[GENERIC] detect broken symlinks'
+    -   id: detect-private-key
+        name: '[GENERIC] detect private keys uploaded by accident'
+    -   id: check-case-conflict
+        name: '[GENERIC] detect OS file naming case conflicts'
+    -   id: check-executables-have-shebangs
+        name: '[GENERIC] check for shebangs in executable files'
+    -   id: check-illegal-windows-names
+        name: '[GENERIC] detect illegal Windows file names'
+    -   id: check-json
+        name: '[JSON] check'
+    -   id: check-xml
+        name: '[XML] check'
+    -   id: check-shebang-scripts-are-executable
+        name: '[GENERIC] check that shebang-containing files are executable'
+
+
+-   repo: https://github.com/DavidAnson/markdownlint-cli2
+    rev: v0.18.1
+    hooks:
+    -   id: markdownlint-cli2
+        name: '[MARKDOWN] lint'
+
+#-   repo: https://github.com/fsfe/reuse-tool
+#    rev: v6.0.0
+#    hooks:
+#    -   id: reuse
+#        name: '[GENERIC] REUSE compatibiltiy'
+
+#-   repo: https://github.com/psf/black-pre-commit-mirror
+#    rev: 25.1.0
+#    hooks:
+#    -   id: black
+#        files: ^(?!preprocessing|postprocessing)
+#        name: '[PYTHON] black'
+#-   repo: https://github.com/pycqa/isort
+#    rev: 6.0.1
+#    hooks:
+#    -   id: isort
+#        files: ^(?!preprocessing|postprocessing)
+#        args: ["--profile", "black"]
+#        name: '[PYTHON] isort'
+-   repo: https://github.com/pycqa/bandit
+    rev: 1.8.6
+    hooks:
+    -   id: bandit
+        args: ["--confidence-level", "high", "--severity-level", "high"]
+        name: '[PYTHON] bandit'
+#-   repo: https://github.com/pycqa/flake8
+#    rev: '7.3.0'
+#    hooks:
+#    -   id: flake8
+#        files: ^(?!preprocessing|postprocessing)
+#        name: '[PYTHON] Flake8'
+
+-   repo: https://github.com/sphinx-contrib/sphinx-lint
+    rev: 'v1.0.0'
+    hooks:
+    -   id: sphinx-lint
+        name: '[SPHINX/RST] sphinx lint'
+
+-   repo: https://github.com/pre-commit/mirrors-clang-format
+    rev: 'v22.1.0'
+    hooks:
+    -   id: clang-format
+        name: '[C++] clang-format'
+
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v6.0.0
+    hooks:
+    -   id: end-of-file-fixer
+        name: '[GENERIC] newline eof'
+    -   id: trailing-whitespace
+        name: '[GENERIC] remove trailing whitespace'

README.md

@@ -1 +1,3 @@
+# Preprocessing Tools for SeisSol
+
 A collection of useful tools for mesh generation and preprocessing for [SeisSol](http://www.seissol.org).

SimModelerDownloadingBuilding/README.md

@@ -1,20 +1,31 @@
 # Downloading SimModeler
 
-Go to [the support area of Simmetrix web site](http://www.simmetrix.com/index.php/support/support-downloads) and download the binaries of the code.
+Go to [the support area of Simmetrix web site](http://www.simmetrix.com/index.php/support/support-downloads)
+and download the binaries of the code.
 
-# Customizing SimModeler for SeisSol
-Add the files of [this folder](https://github.com/SeisSol/Meshing/tree/master/SimModelerDownloadingBuilding/SimModelerCustomization) to the main directory of SimModeler. These files allow defining properly boundary conditions and exporting the mesh in the proper format.
+## Customizing SimModeler for SeisSol
 
+Add the files of [this folder](https://github.com/SeisSol/Meshing/tree/master/SimModelerDownloadingBuilding/SimModelerCustomization)
+to the main directory of SimModeler. These files allow
+defining properly boundary conditions and exporting the
+mesh in the proper format.
 
-# Downloading SimModeler modeling suite
+## Downloading SimModeler modeling suite
 
-Go to [the support area of Simmetrix web site](http://www.simmetrix.com/index.php/support/support-downloads) to see the available versions of SimModeler modeling suite. Then use this [script](https://github.com/SeisSol/Meshing/tree/master/SimModelerDownloadingBuilding/downloadSimLib.sh) to download all components of the library. Please make sure that all components that you download are included in your licence agreeement.
+Go to [the support area of Simmetrix web site](http://www.simmetrix.com/index.php/support/support-downloads)
+to see the available versions of SimModeler modeling suite.
+Then use this [script](https://github.com/SeisSol/Meshing/tree/master/SimModelerDownloadingBuilding/downloadSimLib.sh)
+to download all components of the library. Please
+make sure that all components that you download
+are included in your licence agreeement.
 
 Finally, untar all the files, using for instance:
+
 ```bash
 for filename in *.tgz
 do
   tar zxf $filename
 done
 ```
+
 The libraries are precompiled, so no need to build them!

SimModelerDownloadingBuilding/SimModelerCustomization/README.md

@@ -1 +1,6 @@
-These files need to be added to the main directory of SimModeler to be able to properly define the boundary conditions and to be able to export the mesh in the proper format.
+# Note
+
+These files need to be added to the main directory
+of SimModeler to be able to properly define the
+boundary conditions and to be able to export
+the mesh in the proper format.

SimModelerDownloadingBuilding/SimModelerCustomization/attDefs/seisSol.adi

@@ -4,4 +4,3 @@ SolverName=seisSol
 [0]
 AttDefs=simSeisSol/attDefs/v000/
 PatternInfo=simSeisSol/export/case/v000/gambit_seisSol.sxi
-

SimModelerDownloadingBuilding/SimModelerCustomization/attDefs/simSeisSol/.svn/pristine/66/6633a98134d729503662fdb7d18fb7fceeb22283.svn-base

@@ -4,4 +4,3 @@ SolverName=seisSol
 [0]
 AttDefs=simSeisSol/attDefs/v000/
 PatternInfo=case/simSeisSol/export/case/v000/gambit_seisSol.sxi
-