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4 changes: 3 additions & 1 deletion R/converters_DIANNtoMSstatsFormat.R
Original file line number Diff line number Diff line change
@@ -1,7 +1,8 @@
#' Import Diann files
#'
#' @inheritParams .sharedParametersAmongConverters
#' @param input name of MSstats input report from Diann, which includes feature-level data.
#' @param input name of MSstats input report from Diann, which includes fragment-level data.
#' Output fragment data with --export-quant flag in DIA-NN 2.0
#' @param annotation name of 'annotation.txt' data which includes Condition, BioReplicate, Run.
#' @param MBR True if analysis was done with match between runs
#' @param global_qvalue_cutoff The qvalue cutoff for the Q.Value column, i.e.
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#' @export
#'
#' @examples
#' # See https://github.com/vdemichev/DiaNN/discussions/1525 for workaround for DIANN 2.0
#' input_file_path = system.file("tinytest/raw_data/DIANN/diann_input.tsv",
#' package="MSstatsConvert")
#' annotation_file_path = system.file("tinytest/raw_data/DIANN/annotation.csv",
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4 changes: 3 additions & 1 deletion man/DIANNtoMSstatsFormat.Rd

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