Download fastqs from SRA easily.
Besides python/pip, the only requirement is wget.
git clone https://github.com/WarrenLab/sra_downloader.git
cd sra_downloader
pip install .
Download a single run:
sra_downloader SRR6364203
Download all runs from an experiment:
sra_downloader SRX4831284
- Implement unit and integration tests
- Allow retries on HTTP errors