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Add indel_ref_signatures to nextflow_schema.json #430

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Merged
efigb merged 2 commits into from
Mar 13, 2026
Merged

Add indel_ref_signatures to nextflow_schema.json #430

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Initial plan
Copilot Mar 13, 2026
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Add indel_ref_signatures to nextflow_schema.json reference_datasets s…
Copilot Mar 13, 2026
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9 changes: 9 additions & 0 deletions nextflow_schema.json
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Expand Up @@ -729,6 +729,15 @@
"fa_icon": "far fa-file-code",
"default": "COSMIC_v3.4_SBS_GRCh38.txt"
},
"indel_ref_signatures": {
"type": "string",
"format": "file-path",
"mimetype": "text/plain",
"description": "Path to file containing the reference indel (ID) signatures to use in SigProfilerAssignment.",
"help_text": "You can obtain it from COSMIC website. Note that for ID signatures the GRCh37 genome version is used.",
"fa_icon": "far fa-file-code",
"default": "COSMIC_v3.4_ID_GRCh37.txt"
},
"wgs_trinuc_counts": {
"type": "string",
"format": "file-path",
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