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1 change: 1 addition & 0 deletions .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -21,3 +21,4 @@ codemeta.json
^Meta$
^CODE_OF_CONDUCT\.md$
^doc$
^\.dir-locals\.el$
28 changes: 18 additions & 10 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ Type: Package
Package: speed
Title: Generate Spatially Efficient Experimental Designs
Version: 0.0.6
Authors@R:
Authors@R:
c(person(given = "Sam",
family = "Rogers",
role = c("aut", "cre"),
Expand All @@ -19,31 +19,39 @@ Authors@R:
family = "Pipattungsakul",
role = "aut",
email = "wasin.pipattungsakul@adelaide.edu.au"),
person(given = "Kai",
family = "Bagley",
email = "kai.bagley@curtin.edu.au",
role = "aut",
comment = c(ORCID = "0009-0004-6579-6959")),
person(given = "University of Adelaide",
role = c("cph", "fnd"),
comment = "https://adelaide.edu.au/"),
person(given = "Grains Research and Development Corporation",
role = c("cph", "fnd"),
comment = "https://grdc.com.au/"))
Description: The Speed package optimises spatial experimental designs by rearranging
treatments to improve statistical efficiency while maintaining statistical validity.
It employs customisable optimisation metrics, with a default approach that balances
minimising treatment adjacency and maintaining spatial balance. Users can supply their
own optimisation metrics to tailor designs to specific experimental requirements.
The package also includes visualisation tools that allow users to inspect
comment = "https://grdc.com.au/"),
person(given = "Curtin University",
role = c("cph"),
comment = c("http://www.curtin.edu.au/", ROR = "02n415q13")))
Description: The Speed package optimises spatial experimental designs by rearranging
treatments to improve statistical efficiency while maintaining statistical validity.
It employs customisable optimisation metrics, with a default approach that balances
minimising treatment adjacency and maintaining spatial balance. Users can supply their
own optimisation metrics to tailor designs to specific experimental requirements.
The package also includes visualisation tools that allow users to inspect
optimised designs.
License: MIT + file LICENSE
URL: https://biometryhub.github.io/speed/
BugReports: https://github.com/biometryhub/speed/issues
Depends: R (>= 4.1)
Imports:
Imports:
farver,
ggplot2,
matrixStats,
rlang,
scales,
stringi
Suggests:
Suggests:
igraph,
patchwork,
quarto,
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8 changes: 8 additions & 0 deletions NAMESPACE
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Expand Up @@ -4,18 +4,26 @@ S3method(autoplot,design)
S3method(print,design)
export(add_buffers)
export(autoplot)
export(calc_concurrence_matrix)
export(calc_incidence_matrix)
export(calc_info_matrix)
export(calculate_adjacency_score)
export(calculate_balance_score)
export(calculate_ed)
export(calculate_efficiency_factor)
export(calculate_efficiency_factors)
export(calculate_nb)
export(compute_L_projection)
export(cor_ar1)
export(cor_ar1_ar1)
export(create_pair_mapping)
export(get_edges)
export(get_vertices)
export(initialise_design_df)
export(initialize_design_df)
export(objective_function)
export(objective_function_factorial)
export(objective_function_info)
export(objective_function_piepho)
export(objective_function_signature)
export(optim_params)
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