[WIP] GRIP engine embedded in a python library

[kellrott]

TODO:

• setup.py
• Unit testing
• pip install
• Documentation
• Better type/error checking
• Fix error logging

[bwalsh]

See questions. I tried following steps in pygripTest setup but I think I'm missing a step

[bwalsh]

python setup.py install --user produces:

...
Installed /Users/walsbr/.local/lib/python3.9/site-packages/pygrip-0.8.0-py3.9-macosx-12.4-arm64.egg
Processing dependencies for pygrip==0.8.0
Searching for pygrip==0.8.0
Reading https://pypi.org/simple/pygrip/
No local packages or working download links found for pygrip==0.8.0
error: Could not find suitable distribution for Requirement.parse('pygrip==0.8.0')```

[bwalsh]

Changed to 3.12, works now

Using /Users/walsbr/bmeg/grip/venv/lib/python3.12/site-packages
Finished processing dependencies for pygrip==0.8.0```

[bwalsh]

However, it doesn't look like it installed?

$ pip freeze | grep pygrip
>>>  (no hits)

python -c "import pygrip"
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Users/walsbr/bmeg/grip/pygrip/__init__.py", line 9, in <module>
    from gripql.query import QueryBuilder
ModuleNotFoundError: No module named 'gripql.query'```

$ pytest test/pygrip_test/test_pygrip.py
========================================================================================== test session starts ==========================================================================================
platform darwin -- Python 3.12.1, pytest-8.1.1, pluggy-1.4.0
rootdir: /Users/walsbr/bmeg/grip
collected 0 items / 1 error

================================================================================================ ERRORS =================================================================================================
___________________________________________________________________________ ERROR collecting test/pygrip_test/test_pygrip.py ____________________________________________________________________________
ImportError while importing test module '/Users/walsbr/bmeg/grip/test/pygrip_test/test_pygrip.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
../../.pyenv/versions/3.12.1/lib/python3.12/importlib/init.py:90: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test/pygrip_test/test_pygrip.py:2: in
import pygrip
E ModuleNotFoundError: No module named 'pygrip'
======================================================================================== short test summary info ========================================================================================
ERROR test/pygrip_test/test_pygrip.py```

[bwalsh]

May need to include setuptools

[matthewpeterkort]

Tests pass. Seems like the data frame association function lists for every vertex all of the edges that are 1 edge away from each other.

In order to make this strategy more flexible like the data-framer is currently, the dataframe_associations function would need to be significantly built out to detect fhir edge locations in the dict and aggregate associations automatically.

Can see how adding edge search via FHIR schema Rel paths would aide in this process.